Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C07
(1180 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638 32 1.0
05_06_0172 + 26138238-26138474,26138712-26139854 31 2.3
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 30 3.1
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 30 4.1
01_05_0490 + 22672241-22674679 26 4.6
02_05_0002 - 24849189-24849825,24850267-24850328 29 7.1
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 29 7.1
01_03_0005 + 11568545-11569119,11569179-11569191 29 7.1
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 26 8.3
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 29 9.4
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 9.4
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 9.4
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 9.4
>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
Length = 504
Score = 31.9 bits (69), Expect = 1.0
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 906 GGGXPPPXXPPPPPXGXF 853
GG PPP PPPPP F
Sbjct: 165 GGAPPPPSPPPPPPVSLF 182
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 903 GGXPPPXXPPPPPXGXFF 850
GG PPP PPPPP F
Sbjct: 165 GGAPPPPSPPPPPPVSLF 182
>05_06_0172 + 26138238-26138474,26138712-26139854
Length = 459
Score = 30.7 bits (66), Expect = 2.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 866 GGGGGXXGGGXPPP 907
GGGGG GGG PPP
Sbjct: 7 GGGGGGGGGGGPPP 20
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 30.3 bits (65), Expect = 3.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 906 GGGXPPPXXPPPPP 865
G G PPP PPPPP
Sbjct: 27 GAGEPPPPLPPPPP 40
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.9 bits (64), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 906 GGGXPPPXXPPPPP 865
G G PPP PPPPP
Sbjct: 29 GDGMPPPLPPPPPP 42
>01_05_0490 + 22672241-22674679
Length = 812
Score = 25.8 bits (54), Expect(2) = 4.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -2
Query: 891 PPXXPPPPPXGXFF 850
PP PPPPP F+
Sbjct: 607 PPPPPPPPPSSIFY 620
Score = 22.2 bits (45), Expect(2) = 4.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 894 PPPXXPPPPP 865
PP PPPPP
Sbjct: 603 PPRRPPPPPP 612
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 906 GGGXPPPXXPPPPP 865
GGG P P PPPPP
Sbjct: 212 GGGHPHPPPPPPPP 225
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 29.1 bits (62), Expect = 7.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -2
Query: 903 GGXPPPXXPPPPPXG 859
G PPP PPPPP G
Sbjct: 421 GPPPPPPPPPPPPVG 435
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 29.1 bits (62), Expect = 7.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 911 GGGGGXPPPXXPPPXPXVFFF 849
GGGGG P PPP P + +F
Sbjct: 130 GGGGGGAYPTPPPPNPFLPYF 150
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 25.8 bits (54), Expect(2) = 8.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = -2
Query: 894 PPPXXPPPPP 865
PPP PPPPP
Sbjct: 275 PPPQAPPPPP 284
Score = 21.4 bits (43), Expect(2) = 8.3
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = -2
Query: 891 PPXXPPPPPXG 859
PP PPPP G
Sbjct: 292 PPRIPPPPVGG 302
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 911 GGGGGXPPPXXPPPXP 864
GGG PPP PPP P
Sbjct: 94 GGGPAQPPPPPPPPQP 109
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 28.7 bits (61), Expect = 9.4
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 911 GGGGGXPPPXXPPPXP 864
GGGG P P PPP P
Sbjct: 36 GGGGAGPTPPPPPPPP 51
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Frame = -2
Query: 906 GGGX---PPPXXPPPPPXG 859
GGG PPP PPPPP G
Sbjct: 94 GGGWVQLPPPPPPPPPPQG 112
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = +3
Query: 225 PPPXXXGGKL----PSFKKSPGAXAEXPLAKP 308
PPP GG P FKKSPGA A A P
Sbjct: 385 PPPALPGGPRARGPPPFKKSPGAAAAAAQADP 416
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,669,194
Number of Sequences: 37544
Number of extensions: 493846
Number of successful extensions: 7910
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6530
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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