Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C07
         (1180 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)               32   0.77 
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                 30   3.1  
SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)                   25   5.8  
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   9.5  
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.5  

>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
          Length = 341

 Score = 32.3 bits (70), Expect = 0.77
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = -2

Query: 906 GGGXPPPXXPPPPPXG 859
           GG  PPP  PPPPP G
Sbjct: 311 GGAPPPPPPPPPPPPG 326


>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 906  GGGXPPPXXPPPPP 865
            GG  PPP  PPPPP
Sbjct: 978  GGSAPPPPPPPPPP 991


>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 305

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 903 GGXPPPXXPPPPP 865
           GG PPP  PPPPP
Sbjct: 193 GGPPPPPPPPPPP 205



 Score = 29.5 bits (63), Expect = 5.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 906 GGGXPPPXXPPPPP 865
           GG  PPP  PPPPP
Sbjct: 193 GGPPPPPPPPPPPP 206


>SB_38456| Best HMM Match : BTB (HMM E-Value=8.8e-26)
          Length = 1410

 Score = 25.0 bits (52), Expect(2) = 5.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 900 GXPPPXXPPPP 868
           G PPP  PPPP
Sbjct: 358 GPPPPPPPPPP 368



 Score = 22.6 bits (46), Expect(2) = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 894 PPPXXPPPPP 865
           PPP  P PPP
Sbjct: 363 PPPPPPTPPP 372


>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 24.6 bits (51), Expect(2) = 8.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 903 GGXPPPXXPPPP 868
           G  PPP  PPPP
Sbjct: 93  GDPPPPATPPPP 104



 Score = 22.6 bits (46), Expect(2) = 8.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 894 PPPXXPPPPP 865
           PPP  PP PP
Sbjct: 102 PPPTMPPTPP 111


>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 382

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -2

Query: 903 GGXPPPXXPPPPPXG 859
           GG PPP  PPP P G
Sbjct: 272 GGMPPPGMPPPMPPG 286


>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 906 GGGXPPPXXPPPPP 865
           GG  PPP  PPPPP
Sbjct: 790 GGITPPPPPPPPPP 803


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,175,914
Number of Sequences: 59808
Number of extensions: 260825
Number of successful extensions: 2142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1727
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3633656180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)