Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C07
         (1180 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    25   6.7  

>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
            terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 25.4 bits (53), Expect(2) = 8.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 1006 FFLXKKXXPPPPPP 1047
            FFL     PPPPPP
Sbjct: 39   FFLPHPPPPPPPPP 52



 Score = 25.0 bits (52), Expect(2) = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 891 PPXXPPPPPXGXFF 850
           PP  PPPPP   +F
Sbjct: 44  PPPPPPPPPPPLYF 57



 Score = 22.2 bits (45), Expect(2) = 6.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 894 PPPXXPPPPP 865
           P P  PPPPP
Sbjct: 42  PHPPPPPPPP 51



 Score = 21.4 bits (43), Expect(2) = 8.7
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 1030 PPPPPPXXXXXXXXFF 1077
            PPPPPP        +F
Sbjct: 45   PPPPPPPPPPLYFSYF 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,229
Number of Sequences: 28952
Number of extensions: 261437
Number of successful extensions: 2886
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2358
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 3005913760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)