Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C06
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    32   0.58 
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    32   0.58 
U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protei...    29   3.1  
M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.     29   3.1  
Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical ...    29   5.4  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    28   9.5  

>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -1

Query: 559 IYNVNAPPALRYKF*GLSIVQRLPHPSN----RNALLLHGKNGQGGGTYPRGLARGPTTF 392
           +++V A P+L+ K  G+S +  + H  +    RNA   HG     GG  PR   R P+  
Sbjct: 615 MFSVLAEPSLKRKHPGISHIPHMEHQKSPLRPRNAPAHHG--ASNGGRAPREDERSPSAR 672

Query: 391 GNKNGQTGNIVLILTLK 341
           G +N +   +   +T K
Sbjct: 673 GAQNIEVMGVSKRITKK 689


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = -1

Query: 559 IYNVNAPPALRYKF*GLSIVQRLPHPSN----RNALLLHGKNGQGGGTYPRGLARGPTTF 392
           +++V A P+L+ K  G+S +  + H  +    RNA   HG     GG  PR   R P+  
Sbjct: 656 MFSVLAEPSLKRKHPGISHIPHMEHQKSPLRPRNAPAHHG--ASNGGRAPREDERSPSAR 713

Query: 391 GNKNGQTGNIVLILTLK 341
           G +N +   +   +T K
Sbjct: 714 GAQNIEVMGVSKRITKK 730


>U61948-2|AAB03143.2|  345|Caenorhabditis elegans Collagen protein
           14 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 454 GKNGQGGGTYPRGLARGPTTFGNKNGQTGNI 362
           G+NG+GGG  P GL  GP     +NG  G +
Sbjct: 292 GENGKGGGQGPSGLP-GPPGQPGQNGAPGEV 321


>M25480-1|AAA27986.1|  326|Caenorhabditis elegans collagen protein.
          Length = 326

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 454 GKNGQGGGTYPRGLARGPTTFGNKNGQTGNI 362
           G+NG+GGG  P GL  GP     +NG  G +
Sbjct: 273 GENGKGGGQGPSGLP-GPPGQPGQNGAPGEV 302


>Z46996-2|CAA87102.1|  679|Caenorhabditis elegans Hypothetical
           protein C34C12.2 protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = -2

Query: 585 LSGYRSPXXXXXXTRHPP*DISSKVSV*FNGCPTLP-TETHY 463
           L+  R P       RH P  + S+ SV F GC   P T  H+
Sbjct: 601 LNALRRPPEWKGQRRHAPSYVKSRESVTFRGCSRFPVTSPHF 642


>AC025722-7|AAK68510.1|  540|Caenorhabditis elegans Hypothetical
           protein Y50D4C.5 protein.
          Length = 540

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 380 WSNGKHRTDLNIKISVVWSTVRNASELCPLKHLHLNAFLN 261
           WS  +   DLN ++ +   T++NA+E  P   +  N  L+
Sbjct: 481 WSINRELQDLNSEMGMASLTIQNANEFLPYLEMRRNELLS 520


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 454 GKNGQGGGTYPRGLARGPTTFGNKNGQTGN 365
           G    GGG + RG  RG   +G  NG  GN
Sbjct: 48  GWGNNGGGGWGRGGGRGGGDWGGNNGGGGN 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,610,822
Number of Sequences: 27780
Number of extensions: 351417
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)