Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C06
         (841 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.87 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 457 HGKNGQGGGTYPRGLARGPTTFGNKN 380
           HGK G  G    RG  RG T F NKN
Sbjct: 86  HGKGGSRG----RGGNRGRTGFNNKN 107


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 646 PASDDPIIHYMGGRAH 599
           PAS DP+++Y  G  H
Sbjct: 160 PASADPMVNYTLGHHH 175


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -1

Query: 670 EVYPTTCNPASDDPIIHYMGGRAHSPSGVKWLPEPIDIYNVN 545
           E+Y    +P  ++P +  +GG   +    K+  + ++  N N
Sbjct: 18  EIYNIIASPQLNNPTLFMIGGVFSNNKSKKYFEQTLNELNFN 59


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 481  SNRNALLLHGKNGQGGG 431
            S  +++LLH K+G  GG
Sbjct: 1415 STSSSILLHWKSGHNGG 1431


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 481  SNRNALLLHGKNGQGGG 431
            S  +++LLH K+G  GG
Sbjct: 1411 STSSSILLHWKSGHNGG 1427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,464
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)