Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C06
         (841 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    36   0.044
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P...    32   0.55 
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ...    31   1.3  
At3g44730.1 68416.m04814 kinesin motor protein-related similar t...    29   5.1  
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)...    29   5.1  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    28   8.9  
At1g52087.1 68414.m05877 hypothetical protein                          28   8.9  

>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
 Frame = -1

Query: 628 IIHYMGGR----AHSPSGVKWLPEPIDIYNVNAPPALRYKF*G----LSIVQR-LPHPSN 476
           I+ ++GGR     H PSG++WL   IDI          Y+  G     ++++R L H   
Sbjct: 770 IVPWVGGRILSMTHVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYNVIERDLEHAGE 829

Query: 475 RNALLLHGKNGQG 437
             +L+L G  G G
Sbjct: 830 EESLILEGDVGGG 842


>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 681

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -1

Query: 505 IVQRLPHPSNRNALLLHGKNGQGGGTYPRGLARGPTTFGNKNGQTG-NIVLILTLKLV 335
           ++  L HP  R  LL  G+ G+G  ++  G+ + P     +NG+ G  + L L LKLV
Sbjct: 323 VLLELLHPGQRALLLPGGRGGRGNASFKSGMNKVPRI--AENGEEGPEMWLDLELKLV 378


>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
           protein 
          Length = 573

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 478 NRNALLLHGKNGQGGGTYPR-GLARGPTTFGNKNGQTG 368
           N N   ++ +NG GG  Y R G ARG    GN+ G  G
Sbjct: 314 NNNNNNMNTQNGDGGRNYGRGGFARGGQGMGNRGGAWG 351


>At3g44730.1 68416.m04814 kinesin motor protein-related similar to 4
           other kinesin-like proteins of A. thaliana: F02P16.12
           (PID:g2191180), katA (D11371), katB (D21137), and katC
           (D21138); contains non-consensus AT-AC splice sites at
           intron 10
          Length = 1087

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 330 VVHGPQRQRAVPXKAFTFERVFESGVRERKLLYDVHKVIR 211
           +++ P +Q     K F+F +VF   V + ++  D   VIR
Sbjct: 408 IINNPFKQEKDARKIFSFNKVFGQTVSQEQIYIDTQPVIR 447


>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
           family protein low similarity to Swift [Xenopus laevis]
           GI:14164561; contains Pfam profiles PF00583:
           acetyltransferase, GNAT family, PF00533: BRCA1 C
           Terminus (BRCT) domain
          Length = 991

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +2

Query: 509 ETLELISQGGWRVYVVDVYGLR*PLNTRWAVSSSTHIMDNRVIGGRVTCCRVDLAASCSG 688
           ++++L    G  VY+  + G+R P++      S T   +N VI  + T    +   S  G
Sbjct: 200 DSVKLRESFGESVYLDCISGIRSPMD------SITGKENNNVISDQATTADSETKCSTPG 253

Query: 689 XAGSWRASLSA 721
              SW ASLS+
Sbjct: 254 LKRSWEASLSS 264


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = -1

Query: 613 GGRAHSPSGVKWLPEPIDIYNVNAPPALRYKF*GLSIVQRLPHPSNRNA 467
           G R  SPS  + LP P     + +PP  R         QRLP P  R A
Sbjct: 439 GARLPSPSIEQRLPSPPVAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRA 487


>At1g52087.1 68414.m05877 hypothetical protein
          Length = 671

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -3

Query: 335 VVWSTVRNASEL--CPLKHLHLNA 270
           + W+ VR+AS L  CP KHL  N+
Sbjct: 576 IYWTPVRDASSLSPCPKKHLQANS 599


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,656,561
Number of Sequences: 28952
Number of extensions: 329075
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)