Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C05
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    54   3e-08
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy...    29   0.59 
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    27   3.2  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   4.2  

>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 10/178 (5%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSXXX 397
           P N E L  I  G  P  L G  ++  + +   +H     +V   + F+GKG  LGS   
Sbjct: 236 PANQEMLRYINSGRAPLHLLGVSMNQPIDVV-VQHRMDEDYVAPFKPFSGKGQRLGSTYM 294

Query: 396 XXXXXXXXXXXGQADRAA---------NLRAAQSAVTLDETQPVTTLQFRLADGTRITGR 244
                            +         N     +++ +DE +P T +Q RL++G R    
Sbjct: 295 QPRMSQMPGGLYTDTSTSSSVPINVKPNSTTPHASLQIDENKPTTRIQVRLSNGGRTVLT 354

Query: 243 FNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDD-AATLAQANLLNSTVMQR 73
            N SHT+  + E V    P      F L   FP+  L DD + T+  A+L N++++Q+
Sbjct: 355 VNLSHTLHDIYEAVRAVSPG----NFILSVPFPAKTLEDDPSVTVEAASLKNASLVQK 408



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 637 LCLYREGFTVDAGPLRHYSXPGER 566
           L  +R GF+VD GP+  Y  P  +
Sbjct: 216 LYFWRNGFSVDDGPIYTYDDPANQ 239


>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -2

Query: 294 VTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAAT 115
           VT +Q R+ +G R   RF+ +  V  +  +V         +PFSL     S     D +T
Sbjct: 353 VTRIQIRMPNGARFIRRFSLTDPVSKVYAYVKGVAEGADKQPFSLTFQRKSLWTSLD-ST 411

Query: 114 LAQANLLNSTV 82
           + +A + N+ +
Sbjct: 412 IKEAGIQNTAL 422


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHM 415
           PENA +L  +   EI S +     S++ S  D R  + P H +   A  G G M
Sbjct: 140 PENAIYLVVLPSYEIESSIDYYLSSLQESFSDFRVPKDPLHGLSGYAVFGLGDM 193


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 703 QMITSQCLHRIHNXQEQVRLVRLCLYREGFTVDAGPLR 590
           ++I S C++  H  +  + L R  L ++G  +   PLR
Sbjct: 217 RIIASDCIYETHFGELAIALFRKYLAKDGIVITEYPLR 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,826
Number of Sequences: 5004
Number of extensions: 35840
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)