Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C05
         (814 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0156 + 23160681-23160862,23161090-23161179,23163145-231634...    95   4e-20
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556...    90   2e-18
11_06_0313 + 22306497-22308938                                         32   0.47 
05_06_0250 - 26682207-26683811                                         28   7.7  
01_05_0427 + 22057201-22057478,22057601-22057793                       28   7.7  

>04_04_0156 +
           23160681-23160862,23161090-23161179,23163145-23163433,
           23164574-23164669,23164755-23165123
          Length = 341

 Score = 95.5 bits (227), Expect = 4e-20
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 3/172 (1%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSEL--SGQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSX 403
           P NA+F+  I++ + P EL  + +   V V++   R E+    +  P  F G G  LG  
Sbjct: 180 PANADFIESIKKSQCPQELEPADRRTPVHVNVI-KRLEDYQAPLRPPSPFQGVGRTLGGG 238

Query: 402 XXXXXXXXXXXXXGQADRAANLRAAQSA-VTLDETQPVTTLQFRLADGTRITGRFNHSHT 226
                         QA   A     +S  + +D++ P T++Q RLADGTR+  RFN  HT
Sbjct: 239 SSAEES--------QAPAPATQEPRRSVGIVVDDSLPFTSIQLRLADGTRMVARFNMHHT 290

Query: 225 VGALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAATLAQANLLNSTVMQRL 70
           VG +R F+  + P    RP+ L T FP  +L D A T+ QA L NS ++Q++
Sbjct: 291 VGDIRSFIDASRPG-ATRPYQLQTGFPPKQLADPAQTVEQAGLANSVIIQKM 341



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 628 YREGFTVDAGPLRHYSXP 575
           +  GFTVD GPLR Y  P
Sbjct: 163 WNNGFTVDDGPLRDYDDP 180


>06_03_0850 -
           25354002-25354391,25354480-25354575,25355352-25355634,
           25357213-25357799
          Length = 451

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 1/168 (0%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEE-CPRHVVKPQAFAGKGHMLGSXX 400
           P NA FL  I+  E PSEL       +V++   R EE CP  V +   F G    LG+  
Sbjct: 283 PANASFLKSIKNSECPSELEPADKKSQVNVNLVRKEEKCPEPVKRAAPFHGAAKTLGTPS 342

Query: 399 XXXXXXXXXXXXGQADRAANLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVG 220
                         A  +    +    +T+D++ P T+LQ R  DG+R+   FN SHT+ 
Sbjct: 343 DNNSTPPEATSAAAAASSTETASKTVTITVDDSLPSTSLQIRFVDGSRMVAHFNTSHTIA 402

Query: 219 ALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAATLAQANLLNSTVMQ 76
            +R F+    P  +   ++L   FP   L D + T+ +A + NS ++Q
Sbjct: 403 DVRAFIDTTRPG-EAGDYTLQAGFPPKPLDDMSKTIEEAGVANSVIIQ 449


>11_06_0313 + 22306497-22308938
          Length = 813

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +2

Query: 128 SPSSALGKAVSRLNGRSWYAGSARDTNSLSAPTVWLWLNRPVMRVPSA 271
           +P+SA+ ++V+R  GR        DT   SAP +    N PV++ PSA
Sbjct: 197 TPASAVNESVTRKRGRPRRVQDGADT---SAPPIQSKYNEPVLQTPSA 241


>05_06_0250 - 26682207-26683811
          Length = 534

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 189 PAYQLRPFSLLTAFPSAELGDD--AATLAQANLLNSTV 82
           PA+QLRP   L  FP   +  D  ++TL    L N T+
Sbjct: 198 PAHQLRPLDRLHIFPHQGICSDPRSSTLTSLTLANCTI 235


>01_05_0427 + 22057201-22057478,22057601-22057793
          Length = 156

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 590 AQRTRVHREAFAVQTQSHQSH 652
           A+  RVH E FA+  Q HQ H
Sbjct: 65  AEHERVHAETFALAPQPHQQH 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,501,931
Number of Sequences: 37544
Number of extensions: 321540
Number of successful extensions: 1213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)