Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C05
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)               77   2e-14
SB_33600| Best HMM Match : UBX (HMM E-Value=4.9e-16)                   38   0.013
SB_40066| Best HMM Match : UBX (HMM E-Value=1.1e-08)                   34   0.16 
SB_38240| Best HMM Match : UBX (HMM E-Value=0.0086)                    32   0.64 
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)             29   3.4  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   5.9  

>SB_33080| Best HMM Match : SEP (HMM E-Value=4.48416e-44)
          Length = 268

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELS--GQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSX 403
           PEN +FL+ +++GEIP EL    +G  V V+LED RHEE      K  AFAG+G  LGS 
Sbjct: 157 PENEDFLASVKKGEIPRELLRLSRGGEVHVNLEDHRHEEYVPQKKKMTAFAGEGRKLGS- 215

Query: 402 XXXXXXXXXXXXXGQADRAANLRAAQSAVTLDETQPVTTLQFRLADGTR 256
                         +A  AAN   A     +D++QP T++Q RLADGTR
Sbjct: 216 --PVPEVKFNEEKKRATAAAN--QAPKPFNIDQSQPTTSIQIRLADGTR 260


>SB_33600| Best HMM Match : UBX (HMM E-Value=4.9e-16)
          Length = 73

 Score = 37.5 bits (83), Expect = 0.013
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -2

Query: 279 FRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAEL--GDDAATLAQ 106
           FRL +G  +TG F  + T+ A+  +V +      + PF+L+T+FP       D   TL  
Sbjct: 1   FRLTNGATMTGSFQATDTLSAVVAYV-QGNRTDGIAPFALMTSFPRKTFSPADMNTTLKD 59

Query: 105 ANLLNSTVM 79
           A L+ S V+
Sbjct: 60  AGLVPSAVL 68


>SB_40066| Best HMM Match : UBX (HMM E-Value=1.1e-08)
          Length = 566

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 27/91 (29%), Positives = 46/91 (50%)
 Frame = -2

Query: 351 RAANLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLR 172
           R   +R A    T  +T   T ++ R  DG  + G F     +  LREFVS++  +  L 
Sbjct: 298 RTKAMREADKKPT--KTYRFTLIRVRFPDGIVLQGTFYSREKLKDLREFVSQSLKSDWL- 354

Query: 171 PFSLLTAFPSAELGDDAATLAQANLLNSTVM 79
           PF L  + P+ +L ++ AT ++  L+ + V+
Sbjct: 355 PFVL--SEPTGQLTNEEATFSELGLVPAAVV 383


>SB_38240| Best HMM Match : UBX (HMM E-Value=0.0086)
          Length = 91

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 26/85 (30%), Positives = 42/85 (49%)
 Frame = -2

Query: 351 RAANLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLR 172
           R   +R A    T  +T   T ++ R  DG  + G F     +  LREFVS++  +  L 
Sbjct: 12  RTKAMREADKKPT--KTYRFTLIRVRFPDGIVLQGTFYSREKLKDLREFVSQSLKSDWL- 68

Query: 171 PFSLLTAFPSAELGDDAATLAQANL 97
           PF L  + P+ +L ++ AT ++  L
Sbjct: 69  PFVL--SEPTGQLTNEEATFSELGL 91


>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
          Length = 263

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 157 QQTEWPQLVRRLRSRHELPQRADRVAVVEPARDAGAVGQSEL 282
           ++ EW Q V R RSR  +P R + VA  E   +   VG+ EL
Sbjct: 193 RRAEWAQTVHRARSR-SIPARVESVA-AEGGAETLVVGKQEL 232


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 53  YWCRYLSRCMTVELSRFACARVAASSPSSALGKAVSRLNGRS-WYAGS 193
           Y CR   R + +       + + ASS +S    A  RL G+S W +GS
Sbjct: 218 YGCRVCERALGMASKSIPDSSITASSSASGYNAAEGRLYGQSAWCSGS 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,990,841
Number of Sequences: 59808
Number of extensions: 322699
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)