Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C05
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.089
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 0.089
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 55  LVSLLEPLHDRRVEQVRLRQGRGVVTQLRAREGRQQTEWPQLVRRLRSRHELPQ 216
           L+ L  P   ++ +  + RQG G   + ++REG     W  L++ L+ R   P+
Sbjct: 423 LLELGFPPRSKKNKLKKPRQGDGAAVKRKSREGSTTYLWEFLLKLLQDREYCPR 476


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 125 SSPSSALGKAVSRLNGR-SWYAGSARDTNS 211
           +SP+SA+ K +S +NG  +  +GSA + +S
Sbjct: 582 TSPNSAVRKCMSPINGSGASGSGSAENLSS 611


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,412
Number of Sequences: 438
Number of extensions: 2650
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)