Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C05
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04210.1 68417.m00597 UBX domain-containing protein similar t...    99   3e-21
At4g22150.1 68417.m03201 UBX domain-containing protein similar t...    91   1e-18
At4g15410.1 68417.m02355 UBX domain-containing protein low simil...    84   9e-17
At3g21660.1 68416.m02731 UBX domain-containing protein contains ...    53   2e-07
At1g22050.1 68414.m02758 ubiquitin family protein contains INTER...    30   1.6  
At4g23040.1 68417.m03322 UBX domain-containing protein similar t...    29   2.8  
At1g02440.1 68414.m00192 ADP-ribosylation factor, putative simil...    29   4.9  

>At4g04210.1 68417.m00597 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 303

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 58/169 (34%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEE-CPRHVVKPQAFAGKGHMLGSXX 400
           PENA FL  IR+ E P EL        V +   R EE CP    +  +F G G  LG   
Sbjct: 134 PENASFLESIRKSECPKELEPADRRAPVHVNLMRKEEKCPERQKRRVSFQGVGRTLGGSN 193

Query: 399 XXXXXXXXXXXXGQADRAANLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVG 220
                                 A   ++ +DET P T++Q RLADGTR+  +FNH HTV 
Sbjct: 194 EGSGSSSPVAPDSAPIPIQTEPAPSQSLVIDETVPTTSIQLRLADGTRLVAKFNHHHTVN 253

Query: 219 ALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAATLAQANLLNSTVMQR 73
            +R F+  + P   L        FP   L D   T+ +A L NS V+Q+
Sbjct: 254 DIRGFIDSSRPGASLNYQLQTMGFPPKPLTDLTQTIEEAGLANSVVLQK 302


>At4g22150.1 68417.m03201 UBX domain-containing protein similar to
           XY40 protein [Rattus norvegicus] GI:2547025; contains
           Pfam profile PF00789: UBX domain
          Length = 302

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 62/170 (36%), Positives = 82/170 (48%), Gaps = 2/170 (1%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELS--GQGVSVRVSLEDSRHEECPRHVVKPQAFAGKGHMLGSX 403
           PENA FL  IR+ E P EL    +   V V+L   R E+CP       +F G G  LG  
Sbjct: 138 PENASFLDSIRKSECPKELEPVDKRAPVHVNLM-RRDEKCPEKEKLKVSFQGVGRTLGGA 196

Query: 402 XXXXXXXXXXXXXGQADRAANLRAAQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTV 223
                           D AA     QS V +DET P T++Q RLADGTR+  +FN+ HTV
Sbjct: 197 SSSTASSQSNL----TDVAAVQSPLQSLV-VDETLPSTSIQLRLADGTRMVAKFNNHHTV 251

Query: 222 GALREFVSRAEPAYQLRPFSLLTAFPSAELGDDAATLAQANLLNSTVMQR 73
             +R F+  + P         +  FP   L D + T+ QA L +S V+Q+
Sbjct: 252 NDIRGFIEFSRPGNPNNYTLQVMGFPPKPLTDPSQTIEQAGLASSVVIQK 301


>At4g15410.1 68417.m02355 UBX domain-containing protein low
           similarity to XY40 protein [Rattus norvegicus]
           GI:2547025; contains Pfam profile PF00789: UBX domain
          Length = 421

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 4/172 (2%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPRHVVKPQ-AFAGKGHMLGSXX 400
           PENA F++ I R E PSEL      + V ++  R  E      KP+  F G G  LG+  
Sbjct: 256 PENAAFMNSISRSECPSELEPADKKIPVHVDLVRRGENFTEPPKPKNPFQGVGRTLGASG 315

Query: 399 XXXXXXXXXXXXGQADRAA-NLRAAQS-AVTLDETQPVTTLQFRLADGTRITGRFNHSHT 226
                        QA  A  N+  A S  + +D   P T++Q RLADGTR+  RFN+ HT
Sbjct: 316 SGSSSAP------QASSAPMNVAPAPSRGLVVDPAAPTTSIQLRLADGTRLVSRFNNHHT 369

Query: 225 VGALREFVSRAEPAYQLRPFSLLT-AFPSAELGDDAATLAQANLLNSTVMQR 73
           V  +R F+  + P    + + LLT  FP  +L +   T+ QA + N+ V+Q+
Sbjct: 370 VRDVRGFIDASRPGGS-KEYQLLTMGFPPKQLTELDQTIEQAGIANAVVIQK 420


>At3g21660.1 68416.m02731 UBX domain-containing protein contains
           Pfam profile: PF00789 UBX domain
          Length = 435

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 27/86 (31%), Positives = 45/86 (52%)
 Frame = -2

Query: 330 AQSAVTLDETQPVTTLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTA 151
           + S++ +D   P T++Q  LAD TRI  +FN  HT+  +R F+  + P        L+  
Sbjct: 349 SMSSLVVDPAAPTTSIQLILADSTRIVTQFNTHHTIRDIRCFIDTSRPDGSKDYQLLIMG 408

Query: 150 FPSAELGDDAATLAQANLLNSTVMQR 73
            P   L D   T+ +A + NS ++Q+
Sbjct: 409 SPPTPLSDFDQTIEKAGIANSVLVQK 434


>At1g22050.1 68414.m02758 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 119

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 285 LQFRLADGTRI-TGRFNHSHTVGALRE 208
           L+FRLADGT I   ++N S TV +L+E
Sbjct: 10  LKFRLADGTDIGPSKYNQSMTVSSLKE 36


>At4g23040.1 68417.m03322 UBX domain-containing protein similar to
           Ara4-interacting protein [Arabidopsis thaliana]
           GI:13160609; contains Pfam profile PF00789: UBX domain
          Length = 525

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 288 TLQFRLADGTRITGRFNHSHTVGALREFVSRAEPAYQLRPFSLLTAFPSAELGD 127
           TLQ RL DGTR   RF  S  + +L +F+       +   + L+  +P    GD
Sbjct: 449 TLQVRLPDGTRHGRRFFKSDKLQSLFDFIDICR-VVKPNTYRLVRPYPRRAFGD 501


>At1g02440.1 68414.m00192 ADP-ribosylation factor, putative similar
           to ADP-ribosylation factor GB:AAA32729 GI:166586 from
           (Arabidopsis thaliana)
          Length = 190

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 576 PENAEFLSCIRRGEIPSELSGQGVSVRVSLEDSRHEECPR--HVVKPQAFAGKG 421
           P+NA  L    + E+P  +S   +S ++ L   R +   R  HV    AF+G G
Sbjct: 122 PDNAPVLVYGNKHEVPGAMSASEISNKLDLTSLRKKNWQRNWHVQSSCAFSGDG 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,779,745
Number of Sequences: 28952
Number of extensions: 212275
Number of successful extensions: 693
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)