Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C03
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    45   1e-05
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    28   1.8  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    27   2.4  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   3.1  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    26   5.5  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   5.5  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    25   9.5  

>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 27/72 (37%), Positives = 38/72 (52%)
 Frame = -3

Query: 594 GESFAVAATEGLMLYSQNAGLDSTFRPYRLEATSTPAAVRQSLRDGAWGSALTGALQLAE 415
           G +FA A TEGLM+YS     D  F P  L+   TP+       +G +  +L  AL+L E
Sbjct: 683 GGAFAAATTEGLMIYSLYN--DFLFDPINLDMDITPSTTLTMCAEGEFLISLVMALRLNE 740

Query: 414 QAPIQECLESVP 379
              +Q+  ES+P
Sbjct: 741 YKVVQKVYESIP 752



 Score = 34.7 bits (76), Expect = 0.016
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = -2

Query: 775 DFVNRRNLXEFGXMALLEER-EDSGRRKRQHXDCRASRPGXMADRNVKPEVRVYCVRFSP 599
           + +N R + E G + L++ + E+S    R       +R G ++ R  +PE+  + V+FSP
Sbjct: 622 EMLNSRKMTEAGSIELIDTQGEESDLEDRIDRTLPGARRGDLSARKTRPEIICHGVQFSP 681

Query: 598 TRG 590
           + G
Sbjct: 682 SGG 684



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = -1

Query: 380  PXKDISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVS-----TGRHKFP-P 219
            P  D+   V  L   Y    +  ++    ++ H+E  L W  ++++       R  F   
Sbjct: 752  PITDVEHVVQELPVSYLANFMGYLSSFAAETPHIEFHLRWMKSVLTYHGEYLRRKNFEFA 811

Query: 218  SALLAIEKVLTVKYSQLSKICDFNKYTI 135
            S L +++K + V   +LS++   N++ +
Sbjct: 812  SQLTSLQKSIVVLSKRLSQLSSNNEFQL 839


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = -1

Query: 410 RPYRSALNLCPXKDISLTV-----SSLDEDYGDRLLSTIARLLEDSRHVEQLL 267
           +PYR+A       D   T+     +S+D    DRLL T+ RL  DSR++  +L
Sbjct: 568 KPYRNAKRRLFLLDYDGTLIESARNSIDAVPTDRLLRTLKRLASDSRNIVWIL 620


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = -1

Query: 407 PYRSALNLCPXKDISLTVSS-----LDEDYGDRLLSTIARLLEDSRHVEQLLHW 261
           P +   N+   K I+LT SS       ED+GD+  ST+      S  +E    W
Sbjct: 278 PKKDNQNVVEEKQINLTTSSDSHPTSTEDFGDKRASTVPTSENTSGFIEYFSQW 331


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 711 ILEGGNVNXPIAGRQDPGTWPIGTSNL-RSACTASGSRRPG 592
           I+ GG  N  +A RQD   + + TS+L      ASG+R  G
Sbjct: 147 IVFGGLTNHDVADRQDNSLYLLNTSSLVWQKANASGARPSG 187


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 609 GSRRPGESFAVAATEGLMLYSQNAGLDSTFRPYRLEATSTP 487
           GSR P E+F ++     +L   NAG DS    + +    TP
Sbjct: 103 GSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTP 143


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 652 PCXRVLTPGNRXVDVSSFQNPPSLPVAPYXRTP 750
           P  R+     +   + +FQ PP +P  P   TP
Sbjct: 126 PVDRIAFAARKRARIEAFQPPPIIPQKPLASTP 158


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 APYRIFVEITYFTQLRVFDGQNF 197
           AP+ IF+E  Y ++LR  DG  +
Sbjct: 49  APFPIFIEAGYGSKLRDVDGHEY 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,967
Number of Sequences: 5004
Number of extensions: 54639
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)