Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C03
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_85| Best HMM Match : PWP2 (HMM E-Value=8.3e-27)                     55   6e-08
SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)                   32   0.63 
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_52692| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)                 28   7.7  

>SB_85| Best HMM Match : PWP2 (HMM E-Value=8.3e-27)
          Length = 357

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 30/71 (42%), Positives = 43/71 (60%)
 Frame = -3

Query: 594 GESFAVAATEGLMLYSQNAGLDSTFRPYRLEATSTPAAVRQSLRDGAWGSALTGALQLAE 415
           G ++A A+TEGL++YS +A L   F PY L++  TP   RQ L  G +  AL    +L E
Sbjct: 76  GRAWAAASTEGLLIYSLDASL--VFDPYDLDSDVTPEVTRQVLARGEYARALVLGFRLNE 133

Query: 414 QAPIQECLESV 382
           Q  I+E +ES+
Sbjct: 134 QQLIKEVVESI 144



 Score = 34.7 bits (76), Expect = 0.089
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -2

Query: 661 GXMADRNVKPEVRVYCVRFSPT 596
           G M+ R  +PE+RV CV+FSPT
Sbjct: 54  GDMSSRRTRPEIRVKCVQFSPT 75



 Score = 34.7 bits (76), Expect = 0.089
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = -1

Query: 371 DISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKFPPSA------L 210
           DI L V +L + Y D+LL  ++  L+ S H++  L W   + +   H     A      L
Sbjct: 148 DIRLVVQALSDTYVDKLLWFVSGQLDTSAHLQFYLTWCQEIFTLHGHVIKQRAGDVMHML 207

Query: 209 LAIEKVLTVKYSQLSKI 159
             ++K LT  + +L K+
Sbjct: 208 RTVQKSLTRHHDELGKL 224


>SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)
          Length = 351

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 17/34 (50%), Positives = 21/34 (61%)
 Frame = +2

Query: 620 HADLRFDVPIGHVPGS*RPAIGMLTFPPSRILPL 721
           H DLRF   IGH PG+   A   LT  P+R++PL
Sbjct: 264 HDDLRFYHQIGHTPGA--TARLSLTLAPARLVPL 295


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -1

Query: 365 SLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKF-PPSALLAIEKVL 189
           S T+ S  E   D   STIA+ ++DS  VEQ+ +   A  S  R +     + L  +KV 
Sbjct: 624 SETLFSFLEILDDFNSSTIAKPMDDSSAVEQMEYQPLASTSDFRSELRAKDSDLTEQKVK 683

Query: 188 TVKYSQLSKICDFNKYTIRCIKTVGDVVLKR 96
           T + S    +C    + + CI      VL R
Sbjct: 684 TFQESHAEFLCQL-IWELLCILPTNHTVLNR 713


>SB_52692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 547 AVQHQALRGGHREALPGSARTGRSTRGPQV*RSYRPCXR-VLTPGNRXVDVSSFQ 708
           A+ HQ L   HR+  P    T R   GP V   YR   R V  PG R   V +++
Sbjct: 451 ALVHQQLVEHHRKNYPRLPATIRFDPGPSVSHRYRKQGRPVHVPGKRGEKVDAYK 505


>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
          Length = 513

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 661 GXMADRNVKPEVRVYCVRFSPTRGELRGGRHGGPDAVQPERR 536
           G +  +N +   R+ CV F+  R  +  G  GGP    P  R
Sbjct: 317 GSIEKKNRRKNTRISCVMFTMRRFRMGRGGRGGPGRPMPYMR 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,160,480
Number of Sequences: 59808
Number of extensions: 469939
Number of successful extensions: 1557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)