Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C03
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical ... 29 5.1
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z70287-5|CAB54288.1| 78|Caenorhabditis elegans Hypothetical pr... 28 6.8
U64441-1|AAB06457.1| 549|Caenorhabditis elegans nonsense-mediat... 28 9.0
U64440-1|AAB06456.1| 549|Caenorhabditis elegans nonsense-mediat... 28 9.0
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 28 9.0
AF003141-6|AAK21489.1| 549|Caenorhabditis elegans Suppressor wi... 28 9.0
AC006661-6|AAF39889.1| 312|Caenorhabditis elegans Hypothetical ... 28 9.0
>U80447-3|AAB37807.2| 910|Caenorhabditis elegans Hypothetical
protein F55F8.3 protein.
Length = 910
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/70 (30%), Positives = 42/70 (60%)
Frame = -3
Query: 594 GESFAVAATEGLMLYSQNAGLDSTFRPYRLEATSTPAAVRQSLRDGAWGSALTGALQLAE 415
G FA+ +TEG+ +YS + S F P++L++ + +++++ + + +A+ +L+L
Sbjct: 702 GRRFAICSTEGVSVYSLDT--ISMFDPFQLDSQTNAEVIKRAVWNNDYSTAIMASLRLNN 759
Query: 414 QAPIQECLES 385
I ECLES
Sbjct: 760 AQYITECLES 769
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -2
Query: 775 DFVNRRNLXEFGXMALL---EEREDSGRRKRQHXDCRASRPGXMADRNVKPEVRVYCVRF 605
DF NRRN EFG M L+ +E ++ + ++ + +R +PEV +Y V +
Sbjct: 640 DF-NRRNFTEFGNMQLVDTSDEEDELEPNNKMSIKLPGTKNFDLGERRARPEVNIYEVTY 698
Query: 604 SPT 596
PT
Sbjct: 699 CPT 701
>AF016424-7|AAB65329.3| 520|Caenorhabditis elegans Hypothetical
protein F39G3.3 protein.
Length = 520
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 201 YGEQRARRELVSPRRHERRGPVQQLLHVPAVLEEAR 308
+G ARR+ +SP R RR P QL + ++ R
Sbjct: 62 HGRSPARRQEISPIRKTRRSPANQLSNYEIAQQKVR 97
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 398 SCMGACSASCRAPVRAEPQAP 460
SCM AC SC PV QAP
Sbjct: 375 SCMPACQPSCTNPVPLTTQAP 395
>Z70287-5|CAB54288.1| 78|Caenorhabditis elegans Hypothetical
protein R09E10.8 protein.
Length = 78
Score = 28.3 bits (60), Expect = 6.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 663 PGTWPIGTSNLRSACTASG 607
P TWP+ +LRSAC G
Sbjct: 33 PKTWPVAQDSLRSACETLG 51
>U64441-1|AAB06457.1| 549|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinprotein.
Length = 549
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 NHDNNIFYSESEDVGPSVSMGSTSSRFKTTSPTV--FMHLIVYLL 150
NH N++F S S + PS+SM S + P V LI YL+
Sbjct: 332 NHINSVFTSMSLTINPSISMTSFLLNGPISEPNVEFLSQLINYLV 376
>U64440-1|AAB06456.1| 549|Caenorhabditis elegans nonsense-mediated
mRNA decay proteinprotein.
Length = 549
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 NHDNNIFYSESEDVGPSVSMGSTSSRFKTTSPTV--FMHLIVYLL 150
NH N++F S S + PS+SM S + P V LI YL+
Sbjct: 332 NHINSVFTSMSLTINPSISMTSFLLNGPISEPNVEFLSQLINYLV 376
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 37 IFYSESEDVGPSVSMGSTSSRFKTTSPTVFMHLIVYLL 150
+ +S+ VGP+ S+ S RF+ + P + HLI+ L
Sbjct: 243 VIFSQILCVGPTSSITSVFIRFRDSIPLEWFHLIISYL 280
>AF003141-6|AAK21489.1| 549|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 5 protein.
Length = 549
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 22 NHDNNIFYSESEDVGPSVSMGSTSSRFKTTSPTV--FMHLIVYLL 150
NH N++F S S + PS+SM S + P V LI YL+
Sbjct: 332 NHINSVFTSMSLTINPSISMTSFLLNGPISEPNVEFLSQLINYLV 376
>AC006661-6|AAF39889.1| 312|Caenorhabditis elegans Hypothetical
protein H20J04.3 protein.
Length = 312
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 488 GVDVASSRYGLKVLSRPAF-WLYSIRPSVAATAKLSPGRREPDAVH 622
G + +YG + S F L+ + P + A++SP R+EP VH
Sbjct: 66 GKEKRKQKYGNEKSSWQYFKHLHFLDPHMTDRAEISPSRKEPTGVH 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,567,649
Number of Sequences: 27780
Number of extensions: 338131
Number of successful extensions: 1022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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