Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C03
(803 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 46 2e-05
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 46 2e-05
At4g21400.1 68417.m03091 protein kinase family protein contains ... 31 0.90
At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative... 29 2.7
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne... 29 3.6
At5g27220.1 68418.m03247 protein transport protein-related low s... 29 3.6
At5g11750.1 68418.m01372 ribosomal protein L19 family protein si... 29 4.8
At4g11630.1 68417.m01860 ribosomal protein L19 family protein si... 29 4.8
At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26) ... 29 4.8
At1g24240.1 68414.m03056 ribosomal protein L19 family protein si... 29 4.8
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-... 28 6.3
At5g54590.1 68418.m06796 protein kinase family protein contains ... 28 8.3
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 28 8.3
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = -1
Query: 371 DISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVST------GRHKFPPSAL 210
DI S+ + Y +RL+ + LLE+ H+E +LHW + ++ AL
Sbjct: 766 DIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPAL 825
Query: 209 LAIEKVLTVKYSQLSKICDFNKYTIRCIKTV 117
+++K +T + L+ +C N+YT+R + +V
Sbjct: 826 RSLQKAITRAHQDLADMCSSNEYTLRYLCSV 856
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = -3
Query: 594 GESFAVAATEGLMLYSQNAGLDST--FRPYRLEATSTPAAVRQSLRDGAWGSALTGALQL 421
G SFA A TEG++++S +D T F P L+ TP AV ++ + AL +++L
Sbjct: 694 GRSFAAATTEGVLIFS----IDDTFIFDPTDLDIDVTPEAVEAAIEEDEVSRALALSMRL 749
Query: 420 AEQAPIQECLESV 382
E + I++C+ +V
Sbjct: 750 NEDSLIKKCIFAV 762
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = -1
Query: 371 DISLTVSSLDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVST------GRHKFPPSAL 210
DI S+ + Y +RL+ + LLE+ H+E +LHW + ++ AL
Sbjct: 806 DIKAVAISVRQKYLERLMEALVDLLENCPHLEFILHWCQEICKAHGSSIQRNYRTLLPAL 865
Query: 209 LAIEKVLTVKYSQLSKICDFNKYTIRCIKTV 117
+++K +T + L+ +C N+YT+R + +V
Sbjct: 866 RSLQKAITRAHQDLADMCSSNEYTLRYLCSV 896
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = -3
Query: 594 GESFAVAATEGLMLYSQNAGLDST--FRPYRLEATSTPAAVRQSLRDGAWGSALTGALQL 421
G SFA A TEG++++S +D T F P L+ TP AV ++ + AL +++L
Sbjct: 734 GRSFAAATTEGVLIFS----IDDTFIFDPTDLDIDVTPEAVEAAIEEDEVSRALALSMRL 789
Query: 420 AEQAPIQECLESV 382
E + I++C+ +V
Sbjct: 790 NEDSLIKKCIFAV 802
>At4g21400.1 68417.m03091 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 711
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 452 QAPSRRDCLTAAGVDVASSRYGLKVLSRPAFWLYSIRPSVAATAKLSP 595
++P+ R + + + + S Y L SRPAF L S+ PS+ ++ P
Sbjct: 648 ESPASRPTMDSVALMLNSYSYTLPTPSRPAFALESVMPSMNVSSSTEP 695
>At5g09350.1 68418.m01083 phosphatidylinositol 4-kinase, putative
strong similarity to gi:4467359
Length = 1116
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 636 NLRSACTASGSRRPGESFAVAATEGLMLYSQNAGLDSTFRPYRLEATSTPAAVRQSLRDG 457
+LRS SG E AV Q AGL RPY + TS+ A+ +++ D
Sbjct: 852 DLRSIIVKSGDDCRQEHLAVQLISHFFDIFQEAGLPLWLRPYEVLVTSSYTALIETIPDT 911
Query: 456 A 454
A
Sbjct: 912 A 912
>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) nearly
identical to gi:4467359
Length = 1121
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = -3
Query: 636 NLRSACTASGSRRPGESFAVAATEGLMLYSQNAGLDSTFRPYRLEATSTPAAVRQSLRDG 457
+LRS SG E AV Q AGL RPY + TS+ A+ +++ D
Sbjct: 857 DLRSIIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYEVLVTSSYTALIETIPDT 916
Query: 456 A 454
A
Sbjct: 917 A 917
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = -1
Query: 197 KVLTVKYSQLSKICD--FNKYTIRCIKTVGDVVLKREEVEPMDTD 69
K LT+ ++++ C+ F + ++ IKT G+V LK +++E MD D
Sbjct: 270 KDLTLVMDKIAE-CEKLFERRSLELIKTQGEVELKGKQLEQMDID 313
>At5g11750.1 68418.m01372 ribosomal protein L19 family protein
similar to plastid ribosomal protein L19 precursor
[Spinacia oleracea] gi|7582403|gb|AAF64312
Length = 229
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 597 PGESFAVAATEGLMLYSQNAGLDSTFRPYRLEA 499
P V+ +G+++ +NAGL+STFR RL A
Sbjct: 153 PENKRRVSIVKGVVIARRNAGLNSTFRIRRLVA 185
>At4g11630.1 68417.m01860 ribosomal protein L19 family protein
similar to plastid ribosomal protein L19 precursor
[Spinacia oleracea] gi|7582403|gb|AAF64312
Length = 225
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 597 PGESFAVAATEGLMLYSQNAGLDSTFRPYRLEA 499
P V+ +G+++ +NAGL+STFR RL A
Sbjct: 149 PENKRRVSIVKGVVIARRNAGLNSTFRIRRLVA 181
>At3g49600.1 68416.m05421 ubiquitin-specific protease 26 (UBP26)
similar to GI:11993492; RNA binding protein - Homo
sapiens, EMBL:AB016089 (N-terminus), several ubiquitin
carboxyl-terminal hydrolases from aa pos. 712
Length = 1067
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 753 SRSSGIWRYWKRGRILEGGNVNXPIAGRQDPGTWPIGTSNLRSACTAS 610
SR SG+W+ K I++ + P R+D + P G +NL + C A+
Sbjct: 74 SRKSGLWQ--KTSEIIQSLGPD-PTLDRRDSESTPAGLTNLGATCYAN 118
>At1g24240.1 68414.m03056 ribosomal protein L19 family protein
similar to plastid ribosomal protein L19 precursor
[Spinacia oleracea] gi|7582403|gb|AAF64312
Length = 222
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -3
Query: 597 PGESFAVAATEGLMLYSQNAGLDSTFRPYRLEA 499
P V+ +G+++ +NAGL+STFR RL A
Sbjct: 146 PENKRRVSIVKGVVIARRNAGLNSTFRIRRLVA 178
>At1g68185.1 68414.m07789 ubiquitin-related similar to
ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
yeast]
Length = 215
Score = 28.3 bits (60), Expect = 6.3
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = -1
Query: 347 LDEDYGDRLLSTIARLLEDSRHVEQLLHWTTALVSTGRHKF--PPSALLAIEKVLTVKYS 174
+D+D D ++ I + + S+ VE+L + TG + PP ++ + +V+ S
Sbjct: 25 IDDDDDDASVTPIPKKAKTSQTVEKLDDDVKVIEVTGDDDWLLPPPKVIFDKSKDSVEDS 84
Query: 173 QLSKICDFNKYTIRCIKTVGDVVLKREEVEPMDTDGPTSSDSE 45
+ + + KTVGDV+ + EE + + + SE
Sbjct: 85 TIKALRSKKMELMSFTKTVGDVMQEVEESAKREVEESRNPSSE 127
>At5g54590.1 68418.m06796 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 261
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 118 TVFMHLIVYLLKSHILLNCEYL 183
T+ MHL+ K+H+L+NC L
Sbjct: 237 TILMHLLNNNFKTHVLINCSRL 258
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 663 PGTWPIGTSNLRSACTASGSRRPGESFAVAATEGLMLYSQNAGLDSTFRPYRLEATST-P 487
P T P+ S +RS+ + S R + A+ + S + + + F+P +TST P
Sbjct: 1638 PKTEPVKYSEVRSSRSESSIVRASQVPALQQLRDVAFPSSLSAIQNAFKPVASSSTSTLP 1697
Query: 486 AAVRQS 469
+ R S
Sbjct: 1698 SGTRSS 1703
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,142
Number of Sequences: 28952
Number of extensions: 315462
Number of successful extensions: 1009
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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