Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_C01
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   0.69 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    22   4.8  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   4.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   6.4  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.4  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 279 HLYHRRERLHARGQRLRAPGGTIRAHGVPVRLHGAGRAE-AHGPAVD 142
           HL H +       +  RAP   +RA G      GA RA+ A GP  D
Sbjct: 261 HLVHHK--CGGEEEAERAPAPAVRAAGDAAAARGAARADGAGGPLHD 305


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 375 LGGPGDQRRARVGDG 419
           LG PGD   A +G G
Sbjct: 149 LGSPGDASNASIGSG 163


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 375 LGGPGDQRRARVGDG 419
           LG PGD   A +G G
Sbjct: 305 LGSPGDASNASIGSG 319


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -3

Query: 196 ACPASWRWTCRSPWAR 149
           A   +WRW C+S + +
Sbjct: 20  ALNGAWRWECKSNYCQ 35


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 228 APGGTIRAHGVPVRLHGAGRAEAHGPAVDP 139
           APGG  +   +      +  A A+GP+ DP
Sbjct: 256 APGGDSQQAALNYSTLASAVASANGPSQDP 285


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,350
Number of Sequences: 336
Number of extensions: 1899
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)