Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_C01
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42011| Best HMM Match : Cleaved_Adhesin (HMM E-Value=3.2) 44 2e-04
SB_18297| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_58553| Best HMM Match : rve (HMM E-Value=0.0011) 30 1.8
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21) 28 9.9
>SB_42011| Best HMM Match : Cleaved_Adhesin (HMM E-Value=3.2)
Length = 122
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 398 SLIAGPSKE-VEALNAAVGATAIAFGQYVVDCSLIPHLPRVTFTIAGNDFTLEGNDYVLR 222
SL+ G + + + + VG QY V+CS I LP +TFTI G + L G Y+L+
Sbjct: 63 SLVTGTAADAILKIIKQVGQNLGKAKQYTVNCSAIDSLPDITFTIGGKKYVLTGKQYILK 122
>SB_18297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 32.3 bits (70), Expect = 0.46
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 258 RLHARGQRLRAPGGTIRAHGVPVRLHGAGRAEAHGPAVDPGG 133
R+ + G R+++ G +++HG V+ HG R ++HG V G
Sbjct: 6 RVKSHGNRVKSHGNRVKSHGNRVKSHG-NRVKSHGNRVKSHG 46
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -1
Query: 249 ARGQRLRAPGGTIRAHGVPVRLHGAGRAEAHGPAVDPGGRVHRQVLHG 106
+ G R+++ G +++HG V+ HG R ++HG V G +R HG
Sbjct: 2 SHGNRVKSHGNRVKSHGNRVKSHG-NRVKSHGNRVKSHG--NRVKSHG 46
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 258 RLHARGQRLRAPGGTIRAHGVPVRLHGAGRAEAHG 154
R+ + G R+++ G +++HG V HG R ++HG
Sbjct: 125 RVKSHGNRVKSHGNRVKSHGNRVTCHG-NRVKSHG 158
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 258 RLHARGQRLRAPGGTIRAHGVPVRLHGAGRAEAHGPAVDPGG 133
R+ + R+++ G +++HG V+ HG R HG V G
Sbjct: 118 RVKSHENRVKSHGNRVKSHGNRVKSHG-NRVTCHGNRVKSHG 158
>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 31.9 bits (69), Expect = 0.61
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +1
Query: 127 NTSPRIHSGPMGFGTSSAMKPDRHTVCPNCATRST*SLPSSVKSFPA 267
+T PR S P+ + A KP T P+ T SLP S KS PA
Sbjct: 197 STVPRSGSPPVS-SSRPAQKPTSQTALPSTEISGTGSLPKSTKSRPA 242
>SB_58553| Best HMM Match : rve (HMM E-Value=0.0011)
Length = 1745
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -1
Query: 246 RGQRLRAPG-GTIRAHGVPVRLHGAGRAEAHGPAVD 142
+G+ L G G +R G VRLH A RA A GPA++
Sbjct: 232 KGEGLTKAGLGRLRPLGRGVRLHSAWRAGAGGPAME 267
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 315 DVLPEGDGRGAHRRVEGFHLLGGPGDQRRARVGD 416
D + DG A EG GGP DQRR GD
Sbjct: 231 DEQKQSDGMNAQASNEGCGQKGGPTDQRRNHEGD 264
>SB_38992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -1
Query: 243 GQRLRAPGGTIRAHGVPVRLHGAGRAEAHGPAVDPGG 133
G R GGT R HG R HG R + G D GG
Sbjct: 7 GSTRRDHGGTGRDHGGTRRDHGGTRRDHGGTGRDHGG 43
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -1
Query: 243 GQRLRAPGGTIRAHGVPVRLHGAGRAEAHGPAVDPGG 133
G R GGT R HG R HG R + G D GG
Sbjct: 98 GGTRRDHGGTRRDHGGTRRDHGGTRRDHDGTGRDHGG 134
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 201 GVPVR--LHGAGRAEAHGPAVDPGGRVHRQ 118
G P+R +H A R A GP ++P G V ++
Sbjct: 600 GAPLRPRVHPASRCHAKGPGIEPKGNVAKR 629
>SB_7259| Best HMM Match : ResIII (HMM E-Value=0.21)
Length = 956
Score = 27.9 bits (59), Expect = 9.9
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 102 ELRVVLADEHVPQDPQRAHGLR---HVQRHEAG-QAHRVPELCHPEHVVVALEREVVPGD 269
ELR + E P+ A R H++++E + +L + + +A REV+
Sbjct: 354 ELRSLCQGEAAPRATSAATKTREAKHLEQNEGWITTPELNDLLDSDDLAMAAAREVLYSV 413
Query: 270 GKGDSRQVRYEAA 308
GK DSR R EAA
Sbjct: 414 GKKDSRLDREEAA 426
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,276,787
Number of Sequences: 59808
Number of extensions: 269569
Number of successful extensions: 1008
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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