Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B24
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    31   0.28 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   2.0  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    28   2.0  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   3.4  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   4.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.0  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   7.9  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -2

Query: 572 FCFIKHKSGLAWSTAPISG--PGLPKYQLLPFDSIQRRAVRIVDNPGLTDRLEPL 414
           F +++  +G  W++       PGL  Y  + FD+  +++ R+ + P   D L+ L
Sbjct: 77  FSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKL 131


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 405 PQTQRFQTIRETGIIDNPNGPPLYGVKWKKLVF 503
           P + R Q +R  G+   PNG P Y  ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 327 RYHLEQFLRALPMEHTEQNTEGTEVPPQTQ 416
           RY LEQ L+  P+EH    TE  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
 Frame = +2

Query: 314 KNEMPVSSRTIP--QSTPHGTYGTKYRGN-RSPSADPEVPNDP*DRDYRQSERPSSVWSQ 484
           K+E    S+ +P  + T +  Y   Y    +SP   P   N P +  Y  S  P     +
Sbjct: 160 KSEYGYPSQFLPIEKLTSNVAYPPNYNNYLKSPYQQPT--NFPPEIQYNYSHSPQHSIQE 217

Query: 485 MEEAGIWGAPXQR 523
            EEA ++G P  R
Sbjct: 218 AEEAAVYGPPVYR 230


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 410 DPEVPNDP*DRDYRQSERPSSVWSQMEEAGIWGAPXQRWEQYSTR 544
           DP+V  DP D +  + E+P SVW+ M +  I  A     EQY  +
Sbjct: 298 DPQVL-DPEDEE--RLEKPYSVWTSMMQRSIQTAAYFDEEQYDIK 339


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 488  EEAGIWGAPXQRWEQYSTRGRTCAL 562
            E+ G+WG   Q +EQ  T+ R+ A+
Sbjct: 2621 EQLGMWGRAQQLYEQAQTKARSEAI 2645


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 209 RLWNELPSTVFPERYDMSFFKXRLVESIKR 120
           + WN L +T FP++  M+  +  L+ S KR
Sbjct: 403 QFWNALLNTTFPDKKAMAPLQNALLNSKKR 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,634,547
Number of Sequences: 5004
Number of extensions: 80135
Number of successful extensions: 221
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)