Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_B24
(861 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g29790.1 68417.m04242 expressed protein 33 0.18
At4g17420.1 68417.m02608 expressed protein contains Pfam domain,... 31 0.75
At3g22520.1 68416.m02846 expressed protein 31 1.3
At3g16200.1 68416.m02045 expressed protein 30 1.7
At2g19390.1 68415.m02262 expressed protein 30 1.7
At5g47420.1 68418.m05843 expressed protein contains Pfam domain,... 29 3.0
At4g23640.1 68417.m03404 potassium transporter / tiny root hair ... 29 3.0
At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containi... 29 3.0
At1g26870.1 68414.m03277 no apical meristem (NAM) family protein... 29 3.0
At4g16141.1 68417.m02446 expressed protein contains 1 predicted ... 29 5.3
At3g21290.1 68416.m02690 dentin sialophosphoprotein-related cont... 29 5.3
At5g65670.2 68418.m08261 auxin-responsive protein / indoleacetic... 28 9.2
At5g65670.1 68418.m08260 auxin-responsive protein / indoleacetic... 28 9.2
>At4g29790.1 68417.m04242 expressed protein
Length = 1211
Score = 33.5 bits (73), Expect = 0.18
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -3
Query: 760 RRRPXXMAPQFXGESLQPSESIGKXGXTFEXCPGSESLEG-KAKWRPNAGVLNRAKRTSR 584
R RP + G+ L +GK G + PG L+ K RP +G LN+ RTS
Sbjct: 159 RSRPEGFSNDRSGDRLALGPGMGKMGIQGQTLPGCFELDQQKLDERPKSGALNKRTRTSM 218
Query: 583 L 581
+
Sbjct: 219 M 219
>At4g17420.1 68417.m02608 expressed protein contains Pfam domain,
PF01987: Protein of unknown function
Length = 285
Score = 31.5 bits (68), Expect = 0.75
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 533 TAPISGPGLPKYQLLPFDSIQRRAVRIVDNPGLTD 429
TA ++GPG+ Q LPF + +R R V +P + +
Sbjct: 223 TATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRE 257
>At3g22520.1 68416.m02846 expressed protein
Length = 600
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 326 PVSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDP*DRDYRQSERPSSV 475
PV ++ P+STP G+ K +G +P+ P+ P + RQS R +S+
Sbjct: 251 PVEAK--PKSTPRGSSNKKKKGATTPATGPQSSTKP--KPSRQSGRRTSI 296
>At3g16200.1 68416.m02045 expressed protein
Length = 452
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 295 WRAVRW*KRDAGIISNNSSEHSPWNIRNKIQREPKSLRRPRGSKRSVRPG 444
W RW K D I S HS W +R + P PR ++ +R G
Sbjct: 173 WFMARWLKPDMMIESGAFKGHSTWVLRQAMPDTPMISLTPRHPEKYLRKG 222
>At2g19390.1 68415.m02262 expressed protein
Length = 1211
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 760 RRRPXXMAPQFXGESLQPSESIGKXGXTFEXCPGSESLEG-KAKWRPNAGVLNRAKRTSR 584
R RP + G+ L +GK G + G L+ K RP +GV N+ RTS
Sbjct: 158 RSRPEGFSGDRSGDRLVSGPGLGKMGIQGQTLAGGFELDQQKLDERPKSGVPNKRTRTSM 217
Query: 583 L 581
+
Sbjct: 218 M 218
>At5g47420.1 68418.m05843 expressed protein contains Pfam domain,
PF01987: Protein of unknown function
Length = 282
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 530 APISGPGLPKYQLLPFDSIQRRAVRIVDNPGLTD 429
A ++GPG+ Q LPF + +R R V +P + +
Sbjct: 221 ATLTGPGIVFIQSLPFHRLSQRIARSVTSPNMRE 254
>At4g23640.1 68417.m03404 potassium transporter / tiny root hair 1
protein (TRH1) identical to tiny root hair 1 protein
[Arabidopsis thaliana] gi|11181958|emb|CAC16137;
KUP/HAK/KT Transporter family member, PMID:11500563;
identical to cDNA mRNA for tiny root hair 1 protein
(trh1) GI:11181957
Length = 775
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -3
Query: 460 FGLSIIPVSRIVWN-LWVCGGTSVPSVFCSVCSMGSALRNCSR*YRHLVFTIAPPATGVE 284
+ L P +IV WV G +P + V + A+ C R RH+ F +
Sbjct: 358 YALGCFPRVKIVHKPRWVLGQIYIPEINWVVMILTLAVTICFRDTRHIAFAFGLACMTLA 417
Query: 283 FIHTTW 266
F+ TTW
Sbjct: 418 FV-TTW 422
>At2g32230.1 68415.m03938 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 572
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 81 LQQCQGXEPSRCLPLNTLHKPRFEEG 158
+Q+CQ PS+ LPL LHK R G
Sbjct: 420 VQRCQQISPSKRLPLVILHKSRVNGG 445
>At1g26870.1 68414.m03277 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to GB:AAD22369, NAM stands for No Apicla
Meristem
Length = 425
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = +2
Query: 431 P*DRDYRQSERPSSVWSQMEEAGIWGAPXQRWEQYSTRGRTC 556
P DR YR S RP+ V AG W A YS+ G C
Sbjct: 84 PRDRKYRNSSRPNRVTG----AGFWKATGTDRPIYSSEGNKC 121
>At4g16141.1 68417.m02446 expressed protein contains 1 predicted
transmembrane domain; contains a partial Pfam PF00320:
GATA zinc finger profile
Length = 226
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 316 KRDAGIISNNSSEHSPWNIRNKIQREPKSLRRPRGSKRSVR 438
K + GI+ E P N++NKI+R+P++ +K++V+
Sbjct: 143 KCEPGIVKIAKGE--PGNVKNKIKRDPENSSSSNNNKKNVK 181
>At3g21290.1 68416.m02690 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 1192
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Frame = +1
Query: 349 SEHSPWNIRNKIQREPKSLRRP--------RGSKRSVRPGLST 453
+E SPW + NK ++EP +R G K S RPG ST
Sbjct: 223 AEGSPWRMSNKQKKEPPPKKRKVDPPPVPVGGPKPSFRPGAST 265
>At5g65670.2 68418.m08261 auxin-responsive protein / indoleacetic
acid-induced protein 9 (IAA9) identical to SP|Q38827
Auxin-responsive protein IAA9 (Indoleacetic acid-induced
protein 9) {Arabidopsis thaliana}
Length = 336
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 329 VSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDP*DRDYRQS 457
V+ + +PQ+ P G T + P+A ++ P R YR++
Sbjct: 154 VTKKDVPQNIPKGQSSTTNNSSSPPAAKAQIVGWPPVRSYRKN 196
>At5g65670.1 68418.m08260 auxin-responsive protein / indoleacetic
acid-induced protein 9 (IAA9) identical to SP|Q38827
Auxin-responsive protein IAA9 (Indoleacetic acid-induced
protein 9) {Arabidopsis thaliana}
Length = 338
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 329 VSSRTIPQSTPHGTYGTKYRGNRSPSADPEVPNDP*DRDYRQS 457
V+ + +PQ+ P G T + P+A ++ P R YR++
Sbjct: 154 VTKKDVPQNIPKGQSSTTNNSSSPPAAKAQIVGWPPVRSYRKN 196
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,808,627
Number of Sequences: 28952
Number of extensions: 458305
Number of successful extensions: 1217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -