Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_B23
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 30 2.1
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 30 2.8
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 30 2.8
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 30 2.8
03_01_0034 + 318432-318825,318902-319851 30 2.8
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 30 2.8
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 30 2.8
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 30 2.8
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516... 29 4.9
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 6.4
02_05_1127 + 34292894-34293284,34293948-34295443 29 6.4
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 408 KAFLHWYTSEGMD-EMEFTEAESNMNDLV 435
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 572 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 599
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 413 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 440
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
+ F HW T G EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419
>08_02_1050 +
23949828-23949981,23950083-23950534,23951599-23951631,
23952069-23952179,23953175-23953348
Length = 307
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 540 SPAPAPRQTLRPRRRWPP 593
SP+P+P + P RRWPP
Sbjct: 27 SPSPSPLLSRAPSRRWPP 44
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 537 RSPAPAPRQTLRPRRRWPPGTVGT 608
R+PAP PR+ +R R R P V T
Sbjct: 31 RAPAPPPREVVRVRLRLTPAPVAT 54
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 558 RQTLRPRRRWPPGTVG 605
R T +P+RRWPPG+ G
Sbjct: 83 RATGQPKRRWPPGSSG 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,413,814
Number of Sequences: 37544
Number of extensions: 306409
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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