Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B23
         (872 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     30   2.8  
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)                     30   2.8  
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     30   2.8  
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)                   28   8.7  

>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
           + F HW T  G        EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419


>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 391

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
           + F HW T  G        EAESNMNDLV
Sbjct: 337 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 364


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 700 RLFXHWXTRRGHGXRWSSPEAESNMNDLV 614
           + F HW T  G        EAESNMNDLV
Sbjct: 392 KAFLHWYTGEGMD-EMEFTEAESNMNDLV 419


>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +3

Query: 528 SCPRSPAPAPRQTLRPRRRWPPGTVGTRXTRSFMLLSASGELHLXP 665
           S PR P P       P R   P +VG R TRS    S+SGE+   P
Sbjct: 42  SRPRLPRPRHFSQSPPPRALHPNSVGIRVTRSTQ-ESSSGEVTAPP 86


>SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)
          Length = 502

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 176 NQVQPYKKKDLFPLCDSVTAPRACSAEGLASLRVAVYCNKHSRAALR 316
           +++Q      L  LC SV+    C+    A L   ++C + S A LR
Sbjct: 136 SRLQQLASLSLTDLCQSVSGDEGCAVAETAELIALMHCLESSAATLR 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,894,503
Number of Sequences: 59808
Number of extensions: 347129
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)