Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B22
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    31   0.14 
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   9.4  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 357 AWNRAGP----LLLADGVLAWLQAVAAFSVLSRVSPLTYXXXXXXXXXXXXXXSLVVLRN 190
           AW   GP    ++L  G LA+    + F ++ + S +T               S +   +
Sbjct: 269 AWKEFGPFMSVVILVPGTLAFFMVASEFGLIQKTSIVTLSVCGILKEIITIIASTLFYHD 328

Query: 189 PAPPLNVVGMSVAVLGVLAYD 127
              P+N+VG+ + + G+  Y+
Sbjct: 329 ILLPINIVGLVITLCGIGVYN 349


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 212 APTTTARFAADATEYVSGDTRDN 280
           APTT ARF+       SGD + N
Sbjct: 59  APTTVARFSPSGYYVASGDNQGN 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,259,473
Number of Sequences: 5004
Number of extensions: 13075
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)