Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B21
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    31   0.25 
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    30   0.33 
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   7.2  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 390  FTFSPPLHDFIARFPEMRRSVSFFQSFRERILDIR 494
            F    PLH+ + R PE  R +SF Q+F   +++ R
Sbjct: 1850 FAVLRPLHEMLERGPETLREISFQQAFGRDLVEAR 1884


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 351 HRHTTKILNTLHQFTFSPPLHD-FIARFPEMRRSV 452
           HR +  IL+ LH+ T SPP+ D  + R  E+ +S+
Sbjct: 299 HRASVDILSNLHESTVSPPMADESVQRSSEVSKSI 333


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 21/96 (21%), Positives = 37/96 (38%)
 Frame = +1

Query: 313 ASNKNSQSYEETDIDTLQKS*THYINLRFRPLFTTLSLAFLKCVGVLAFSRAFVNAFSTF 492
           A+NK  +S      D+ +K+   +++      F      FL   G L             
Sbjct: 434 ANNKRLRSLSTYLTDSRRKA-NRFLSYDEEHYFLQKKNLFLNADGTLVAKEKLEKIAVQI 492

Query: 493 DITFGL*YLLFNGCMMSSTFLSPNK*ANGLTVTNLV 600
           D T  L Y++ +  ++ S    PN+    +  TNL+
Sbjct: 493 DTTLFLIYMISSPALVGSLLRLPNRCETSVVETNLL 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,500
Number of Sequences: 5004
Number of extensions: 53207
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)