Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B21
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic...    31   1.3  
X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic...    31   1.3  
U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated p...    31   1.3  
AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical ...    28   6.8  

>X98600-1|CAA67197.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 376 THYINLRFRPLFTTLSLAFLKCVGV 450
           T+Y+ LR +PLF T++L F  CVG+
Sbjct: 248 TYYLQLRRKPLFYTVNLVF-PCVGI 271


>X98599-1|CAA67196.1|  511|Caenorhabditis elegans alpha nicotinic
           acetylcholine receptorsubunit protein.
          Length = 511

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 376 THYINLRFRPLFTTLSLAFLKCVGV 450
           T+Y+ LR +PLF T++L F  CVG+
Sbjct: 248 TYYLQLRRKPLFYTVNLVF-PCVGI 271


>U88175-2|AAB42282.2|  511|Caenorhabditis elegans Uncoordinated
           protein 38 protein.
          Length = 511

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +1

Query: 376 THYINLRFRPLFTTLSLAFLKCVGV 450
           T+Y+ LR +PLF T++L F  CVG+
Sbjct: 248 TYYLQLRRKPLFYTVNLVF-PCVGI 271


>AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical
           protein C03H5.2 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 552 LVAQQVSQWIDRH*LGTVR*LNQILTCWLFDW 647
           L   +VS WI    L        +L CWL+DW
Sbjct: 210 LKTSKVSLWIRNIQLAFFSVFGALLVCWLYDW 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,159
Number of Sequences: 27780
Number of extensions: 287834
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)