Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B20
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)                    31   1.4  
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)                 30   1.9  
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)                     30   2.5  
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)                      29   3.3  
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)                      29   4.3  
SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)                   28   7.6  
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)               28   7.6  

>SB_37181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 31.5 bits (68), Expect = 0.81
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ + H V  ++C P RV V VFP
Sbjct: 186 CSCRCVPHYVSMSMCSPSRVHVDVFP 211


>SB_37180| Best HMM Match : zf-AN1 (HMM E-Value=3.7)
          Length = 519

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 160 SLCSCQSISH-VGKNVCDPKRVRV*VFP 80
           S CSC+ +SH V   +C P RV V VFP
Sbjct: 280 SSCSCRCVSHHVLMPMCSPLRVHVDVFP 307



 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ + H V  ++C P R +V VFP
Sbjct: 130 CSCRCVPHHVFMSMCPPSRAQVDVFP 155


>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
          Length = 186

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ +SH V  ++C P R  V VFP
Sbjct: 74  CSCRCVSHHVLMSMCSPSRAHVDVFP 99



 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ + H V  ++C P R  V VFP
Sbjct: 46  CSCRCVPHHVLMSMCSPSRAHVDVFP 71


>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
          Length = 334

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ +SH V   +C P RV V VFP
Sbjct: 2   CSCRCVSHHVLMPMCSPLRVHVDVFP 27


>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
          Length = 1282

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ + H V K++C P R  V VFP
Sbjct: 563 CSCRCVHHHVLKSMCFPSRAHVDVFP 588


>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 879

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ +SH V   +C P R  V VFP
Sbjct: 102 CSCRCVSHHVLMPMCSPSRAHVDVFP 127


>SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 5/111 (4%)
 Frame = -2

Query: 521 YVTLHSLGC--GCYVINLISVWCRRPKAELKIVQNFILKEV--FNVYCLF*I*VLWELRI 354
           Y+TL S+ C  G   I L SV C      + +     +K V    +  +  +  +  + +
Sbjct: 60  YITLASVTCVTGVLYITLASVTCFTGVPHITLASVTCVKGVPYITLASVTCVTGVPYITL 119

Query: 353 STFSYTAGVSLT*LCSVF-LTSVHIMLLNVKSCDFEADYVTLTFVTC*IGV 204
           ++ +   GV    L SV  +T V  + L   +C     Y+TLT V C  GV
Sbjct: 120 TSVTCVTGVPYITLASVACVTGVPYITLASVACVTGVPYITLTSVACVTGV 170


>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
          Length = 540

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 154 CSCQSISH-VGKNVCDPKRVRV*VFP 80
           CSC+ + H V  ++C P R  V VFP
Sbjct: 177 CSCRCVPHHVLMSMCSPSRAHVDVFP 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,303,343
Number of Sequences: 59808
Number of extensions: 354791
Number of successful extensions: 482
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)