Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B18
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   4.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   5.8  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 456 IITVTISRLSYCEIHFSREKTGKSAPESLLYK-APVTRTALQLN-SYCCLHSAGFS 617
           ++++ IS L YC + F   K+   + +  L+K  P+    L L+ S+ C+ + G S
Sbjct: 163 LVSIGISTLYYCFVQFMEVKSALISYDRSLFKFYPIDLFVLLLSQSFICIIAFGVS 218


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 404 WFALYNHQNLCSTFLIMAMTVQLFCHPPLSKSR 306
           W+++ N  +L +  L MA TVQ + H P  +SR
Sbjct: 349 WYSISNDPSLANKRLEMAFTVQEY-HSPNGQSR 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,991
Number of Sequences: 5004
Number of extensions: 50173
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)