Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B17
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)                 25   6.8  

>SB_11387| Best HMM Match : MFS_1 (HMM E-Value=4.4e-06)
          Length = 815

 Score = 25.4 bits (53), Expect(2) = 6.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 615 FEFMAWYLGPLGQLPVFMGGCWVVR 689
           F F+ WYL  LG   + MG    +R
Sbjct: 410 FNFLNWYLEDLGASKLLMGSATTMR 434



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 600 PRLFFFEFMAWYLG 641
           P+  FF  +AW+LG
Sbjct: 390 PKYAFFMTIAWFLG 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,574,589
Number of Sequences: 59808
Number of extensions: 404453
Number of successful extensions: 752
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)