Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B16
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...   138   6e-34
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    28   1.8  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   5.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   9.4  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   9.4  

>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
            eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score =  138 bits (335), Expect = 6e-34
 Identities = 89/245 (36%), Positives = 125/245 (51%), Gaps = 4/245 (1%)
 Frame = -3

Query: 794  ILYNPTXANLGLXAFRRGNVKRSSWLFGRVNDDWKA*RAIGXXXXXXXXX*ALKGAGEN* 615
            IL+N T   +GL AFR G V+ + +    ++   +    +G                   
Sbjct: 615  ILHNRTMVQIGLCAFRNGMVQETQYALQDISTTGRVKELLGQGIQAPKFGQFTPDQDRLD 674

Query: 614  KTTPDAFSHAH*S-GXLECVYLVSAMLIEIPYMAAHEF---DARRRMISKTFYQNLRASE 447
            K     F H H +   LECVYL  +ML+EIP MAA      D+R+R+IS+ F + L   +
Sbjct: 675  KQLVLPF-HMHINLELLECVYLTCSMLMEIPAMAAASSTASDSRKRVISRPFRRMLEYID 733

Query: 446  RQALVGPPESMREHAVAAARAMRRGDWRACLNYIVNEKMNAKVWDLMVGADNVRAMLGCL 267
            RQ  VGPPE+ RE+ + A++A+  G+WR C  +I       K+W LM  AD ++ ML   
Sbjct: 734  RQLFVGPPENTREYIMQASKALADGEWRRCEEFI----HAIKIWSLMPDADKIKQMLSEK 789

Query: 266  IREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKTRQHYQLQTVSFSIPRTI 87
            IREE LRTYL  YA  Y S+SL  LA  F+LP QRV  +VS+     ++      +   I
Sbjct: 790  IREEGLRTYLLAYAAFYDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAI 849

Query: 86   NFTNV 72
             F  V
Sbjct: 850  IFERV 854


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 290 HYQLRPLNPKPWHSFFHS 343
           H +++ LNP PW SF H+
Sbjct: 115 HEKMKELNPAPWDSFKHN 132


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 410 EHAVAAARAMRRGDWRACLNYIVNEK 333
           +HA   A+AMR G   ACL Y+ + +
Sbjct: 463 QHANRVAKAMRVGSLIACLAYVCDSR 488


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 681 SYWLKVYYLNVNMSAQRSRRKLK 613
           SYWL  YY+  NM++  S RK++
Sbjct: 572 SYWL--YYMYANMTSLNSWRKIR 592


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 536 IEIPYMAAHEFDARRRMISKTFYQNLRASERQALVGPPES 417
           ++IPYM  + F +    I+ T    LR +  QA    P+S
Sbjct: 495 MQIPYMKPNAFPSNPTYIASTPVTQLRRAFEQATAHVPQS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,347
Number of Sequences: 5004
Number of extensions: 60247
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)