Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B16
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)                      80   2e-15
SB_17646| Best HMM Match : DUF1521 (HMM E-Value=0.048)                 33   0.20 
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)         31   1.4  
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  

>SB_724| Best HMM Match : eIF-3c_N (HMM E-Value=0)
          Length = 564

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 50/122 (40%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
 Frame = -3

Query: 794 ILYNPTXANLGLXAFRRGNVKRSSWLFGRVNDDWKA*RAIGXXXXXXXXX*ALKGAGEN* 615
           ILYN T   LGL AFR G +K +      V    +A   +                 +  
Sbjct: 443 ILYNRTMVQLGLCAFRHGMIKDAHNALHDVQSSGRAKELLAQGLMQQRQFERTPEQEKIE 502

Query: 614 KTTPDAFSHAH*S-GXLECVYLVSAMLIEIPYMAAHEFDARRRMISKTFYQNLRASERQA 438
           K     F H H +   LECVYL SAML+EIP+MAAH +D RRR+ISK+F+  LR S++Q 
Sbjct: 503 KRRQVPF-HMHINLELLECVYLTSAMLLEIPFMAAHAYDYRRRVISKSFHYQLRQSDKQT 561

Query: 437 LV 432
           LV
Sbjct: 562 LV 563



 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 35/53 (66%), Positives = 44/53 (83%)
 Frame = -1

Query: 733 KEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINL 575
           K+AH  L ++  +G+ KELLAQGL+ QRQ ER+ EQEKIEK+RQ+PFHMHINL
Sbjct: 463 KDAHNALHDVQSSGRAKELLAQGLMQQRQFERTPEQEKIEKRRQVPFHMHINL 515


>SB_17646| Best HMM Match : DUF1521 (HMM E-Value=0.048)
          Length = 484

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
 Frame = -3

Query: 455 ASERQALVGPPESMREHAVAAARAMRRGDWRACLNYIVNEKMNAKVWDLMVGADNVRAML 276
           ASE+   +   ++M++ A  + R   +        YI+    ++   + +  +  ++A +
Sbjct: 178 ASEKSVNIDAKKNMKKRAKGSTRRTLQ------TRYILQSVSSSNSPEAVKSSVFLQAKM 231

Query: 275 GCLIREESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKT-RQHYQLQTVSFSI 99
            C   +ESLRT L  +  +  ++++R LAD  ++   R HSL   T R+H +   ++ + 
Sbjct: 232 -CTQTQESLRTELAMFKEM--TIAMRVLADKAKMTETRRHSLPEITNRRHLEASHLAANC 288

Query: 98  PRTINFT 78
             T NF+
Sbjct: 289 KETRNFS 295


>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
          Length = 618

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
 Frame = -3

Query: 374 GDWRACLNYIVNEKMNAKVWDLMVGAD--NVRAMLGCLIREESLRTYLFTYAHVYASLSL 201
           GD+ + LN   + ++++  + +   A   N+ +  GC+     L   L  ++      S 
Sbjct: 252 GDFNSVLNRTFDRRVDSAHFYVESSASIVNLLSSSGCVDAFRHLHPDLRQFSWTKPDGSF 311

Query: 200 RSLADMFELPRQRVHSLVSKTRQHYQLQTVSF---SIPRTINFTNV 72
            S  D+   PR  +H+L S T   Y     +F   S+PR I+F  V
Sbjct: 312 ASRIDLICFPRSWLHNLSSCTISPYLYSDHAFVCASLPRQISFRGV 357


>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 265 YVKSPYVPICSHMLTCMRHCHCVLSLTC 182
           Y+  PY   C + +TC  H  C   +TC
Sbjct: 684 YITCPYGITCQYDITCPYHITCPYHITC 711


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,680,698
Number of Sequences: 59808
Number of extensions: 464479
Number of successful extensions: 1088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)