Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B16
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56150.1 68416.m06241 eukaryotic translation initiation facto...   143   1e-34
At3g22860.1 68416.m02882 eukaryotic translation initiation facto...   120   1e-27
At5g52860.1 68418.m06561 ABC transporter family protein                28   6.2  
At1g23780.1 68414.m03000 F-box family protein contains Pfam PF00...    28   8.2  
At1g14420.1 68414.m01710 pectate lyase family protein similar to...    28   8.2  

>At3g56150.1 68416.m06241 eukaryotic translation initiation factor 3
            subunit 8 / eIF3 p110 / eIF3c / p105 (TIF3C1) nearly
            identical to SP|O49160 Eukaryotic translation initiation
            factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105)
            {Arabidopsis thaliana}
          Length = 900

 Score =  143 bits (346), Expect = 1e-34
 Identities = 91/242 (37%), Positives = 131/242 (54%), Gaps = 1/242 (0%)
 Frame = -3

Query: 794  ILYNPTXANLGLXAFRRGNVKRSSWLFGRVNDDWKA*RAIGXXXXXXXXX*ALKGAGEN* 615
            IL+N T A LGL AFR G +  S      +    +  R +                 E  
Sbjct: 538  ILFNRTMAQLGLCAFRAGMITESHSCLSELYSGQRV-RELLAQGVSQSRYHEKTPEQERM 596

Query: 614  KTTPDAFSHAH*S-GXLECVYLVSAMLIEIPYMAAHEFDARRRMISKTFYQNLRASERQA 438
            +       H H +   LE V+L+ AML+E+P MAA+  DA+RR+ISK F + L  SERQA
Sbjct: 597  ERRRQMPYHMHLNLELLEAVHLICAMLLEVPNMAANSHDAKRRVISKNFRRLLEISERQA 656

Query: 437  LVGPPESMREHAVAAARAMRRGDWRACLNYIVNEKMNAKVWDLMVGADNVRAMLGCLIRE 258
               PPE++R+H +AA RA+ +GD++     ++N   + +VW L+   D++  M+   I+E
Sbjct: 657  FTAPPENVRDHVMAATRALTKGDFQKAFE-VLN---SLEVWRLLKNRDSILDMVKDRIKE 712

Query: 257  ESLRTYLFTYAHVYASLSLRSLADMFELPRQRVHSLVSKTRQHYQLQTVSFSIPRTINFT 78
            E+LRTYLFTY+  Y SLSL  LA MF++   +VHS+VSK   + +L        R I F 
Sbjct: 713  EALRTYLFTYSSSYESLSLDQLAKMFDVSEPQVHSIVSKMMINEELHASWDQPTRCIVFH 772

Query: 77   NV 72
             V
Sbjct: 773  EV 774



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 28/52 (53%), Positives = 41/52 (78%)
 Frame = -1

Query: 730 EAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINL 575
           E+H CL+EL    + +ELLAQG+   R HE++ EQE++E++RQMP+HMH+NL
Sbjct: 559 ESHSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHLNL 610


>At3g22860.1 68416.m02882 eukaryotic translation initiation factor 3
            subunit 8, putative / eIF3c, putative similar to
            eukaryotic translation initiation factor 3 subunit 8
            (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160
          Length = 800

 Score =  120 bits (288), Expect = 1e-27
 Identities = 76/219 (34%), Positives = 113/219 (51%), Gaps = 1/219 (0%)
 Frame = -3

Query: 794  ILYNPTXANLGLXAFRRGNVKRSSWLFGRVNDDWKA*RAIGXXXXXXXXX*ALKGAGEN* 615
            IL+N T A LGL AFR G +  S      +    +    +G                   
Sbjct: 491  ILFNRTMAQLGLCAFRVGMITESHSCLSELYSGNRVRELLGQGVSQSRDHEKTTEQMLME 550

Query: 614  KTTPDAFSHAH*SGXLECVYLVSAMLIEIPYMAAHEFDARRRMISKTFYQNLRASERQAL 435
            + T   +        LE VYL  AML+E+P MAA+  D++ + ISK   + L  SE+QA 
Sbjct: 551  RRTQIPYHMNINLELLEAVYLTCAMLLEVPNMAANSHDSKHKPISKNIQRLLEKSEKQAF 610

Query: 434  VGPPESMREHAVAAARAMRRGDWRACLNYIVNEKMNAKVWDLMVGADNVRAMLGCLIREE 255
              PPE++R H +AA RA+ +G+++   + ++N   +  +W L    D++  M+   I E 
Sbjct: 611  TAPPENVRVHVIAATRALIKGNFQEAFS-VLN---SLDIWRLFKNRDSILDMVKASISEV 666

Query: 254  SLRTYLFTY-AHVYASLSLRSLADMFELPRQRVHSLVSK 141
            +LRTYLFTY +  Y SLSL  LA MF++    V+S+VSK
Sbjct: 667  ALRTYLFTYSSSCYKSLSLAELAKMFDISESHVYSIVSK 705



 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 24/52 (46%), Positives = 37/52 (71%)
 Frame = -1

Query: 730 EAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINL 575
           E+H CL+EL    + +ELL QG+   R HE++ EQ  +E++ Q+P+HM+INL
Sbjct: 512 ESHSCLSELYSGNRVRELLGQGVSQSRDHEKTTEQMLMERRTQIPYHMNINL 563


>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -2

Query: 693 ESLKSYWLKVYYLNVNMSAQRSRRKLKNNARCLFTCTLIW----XTRVCLFSISD 541
           ESL  YWL +Y+ ++   A  +   L N   CL +  L+W     T++C+ +  D
Sbjct: 494 ESLPKYWLFMYFFSMYKYALDA--LLINEYSCLASKCLVWLEEAQTKICMVTGGD 546


>At1g23780.1 68414.m03000 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only
           protein 7 {Homo sapiens}; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 475

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 272 NLALHEHYQLRPLNPKPWHSFFHSRCNLGKLS 367
           ++ +H     R L  + W   F  RCNLG L+
Sbjct: 444 SIGIHPGQSARGLGRRTWGQLFTPRCNLGGLN 475


>At1g14420.1 68414.m01710 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 459

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -2

Query: 627 RRKLKNNARCLFTCTLIWXTRVCLFSISDAD*DSVHGSTRI*CPTSH 487
           R K   +   LF  T IW   V +   +D   D++ GST +    SH
Sbjct: 247 RTKSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGSTAVTISNSH 293


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,992
Number of Sequences: 28952
Number of extensions: 313007
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)