Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B15
         (815 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   8.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 459 LKCSMPSATERNAHLLACAWRNSSAYSDEANLPLKY 566
           LKC++PS       + A    + S Y+  AN   KY
Sbjct: 142 LKCNIPSFVADFVRVEAWVGSDGSLYNHTANYDSKY 177


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 329 FYGLFECSTIGVQCSSS-NKTLYISRI 406
           F+  F C+  GV+CS   +  L+I+R+
Sbjct: 495 FHNPFTCNMCGVECSDKVSFFLHIARV 521


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 172 ERNDS*AIFISFLCFCYLVLVF 237
           ERND  ++      FCY + +F
Sbjct: 133 ERNDYVSLLQLVFVFCYFIYLF 154


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = +3

Query: 348 VPLLAYNAPLATRPSTFLGSMLRALFKH*NASECLPALKC 467
           +PL    AP    PS    S  + LF +      +PA  C
Sbjct: 183 LPLPPIFAPTMINPSAICESAAQLLFMNVQWVRSIPAFTC 222


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,961
Number of Sequences: 336
Number of extensions: 3612
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)