Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B14
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein con...    29   2.7  
At5g24050.1 68418.m02825 hypothetical protein contains Pfam prof...    29   2.7  

>At5g28510.1 68418.m03470 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis
           thaliana]
          Length = 533

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 94  DNDYARFLSYLVLSSFNRRKLVFF--YK*KKKHWTSYNSP 207
           +N+Y  FLS  ++  F       F  Y  K KHW ++N P
Sbjct: 169 ENEYGGFLSAHIVKDFREYAEFVFKEYGGKVKHWITFNEP 208


>At5g24050.1 68418.m02825 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 349

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 180 FFLFVKKNQFASVKRRQN*IRQKTCIIIISLNK 82
           F LF +K + + VKR+QN IR  T   +I LN+
Sbjct: 58  FCLFPRKTRSSLVKRQQNLIRVSTSSSLIDLNQ 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,039,638
Number of Sequences: 28952
Number of extensions: 137937
Number of successful extensions: 295
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)