Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B13
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   6.8  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    26   6.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.8  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   9.0  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   9.0  

>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 315 YNMQKNFIHKQSFFSGEKLTKKNNFLIF 232
           YN+++NF    SF +GEK+  ++ F  F
Sbjct: 37  YNLKENFEALSSFDNGEKIWVEDAFTTF 64


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 276 FSGEKLTKKNNFLIFSTKIIVFFSYGNIRLSTT 178
           FS E L+KKN FLI   +    F   N+ +ST+
Sbjct: 833 FSFEPLSKKNRFLINLFRFSFSFILYNLLISTS 865


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 215  CFFRMATLDYPRLVQVKHLEILSKS 141
            CFFR+    Y RL ++K+LE ++ S
Sbjct: 1012 CFFRLFHTLYSRLEEIKNLEQMAYS 1036


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 366 SPLTPQHINNPNYIFLHYNMQKNFIH 289
           SP TP   ++P+ ++L+Y  +K+  H
Sbjct: 229 SPETPSSSDSPSNLYLNYPKRKSITH 254


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 218 IIFVEKMRKLFFFVSFSPEKKLCL*IKFF 304
           II+ EK RK  +F + SPE    L  K+F
Sbjct: 442 IIYKEKKRKWIYFTNKSPEMVSYLREKYF 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,455
Number of Sequences: 5004
Number of extensions: 50524
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)