Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B13
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047     29   3.1  
05_04_0044 + 17470457-17470613,17470696-17470789,17471069-174711...    29   5.4  
01_01_0514 - 3739843-3739933,3740120-3740212,3740346-3740453,374...    29   5.4  
01_05_0032 + 17380349-17381088,17382720-17382746,17382870-173830...    28   7.1  
03_01_0020 + 180963-181346,181432-181994,183000-183822                 28   9.4  

>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
          Length = 396

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/45 (37%), Positives = 18/45 (40%)
 Frame = -3

Query: 623 NXVQDLSHREHSYTLGGCCAQQHDVPPRARGPAVRQQGQLHAAPG 489
           N  Q   H   S T       QH  PP A    VRQQ +  AA G
Sbjct: 307 NHAQPPHHDAGSKTAAAAKHSQHQPPPSAAAAVVRQQQEQAAAAG 351


>05_04_0044 +
           17470457-17470613,17470696-17470789,17471069-17471132,
           17471378-17471477,17472027-17472085,17472572-17472647,
           17472761-17472832,17473788-17473932,17474044-17474299,
           17475190-17475305,17475503-17475723,17475996-17476024,
           17476622-17476740,17476828-17477023,17477242-17477250
          Length = 570

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 458 LHHLRFEESSRPRXPCCAPSCSWDSKF 378
           LHH+ FE+ S PR P    S  W SKF
Sbjct: 532 LHHVDFEDPSLPRQP--KLSAQWYSKF 556


>01_01_0514 -
           3739843-3739933,3740120-3740212,3740346-3740453,
           3740559-3740616,3740778-3741012
          Length = 194

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 584 TLGGCCAQQHDVPP--RARGPAVRQQGQLHAAPGFR*RPS 471
           T   CC +    PP  R RGP  +QQ    A  G R RPS
Sbjct: 3   TTSACCYRPLSAPPLHRRRGPPPQQQQLRTAVGGPRPRPS 42


>01_05_0032 +
           17380349-17381088,17382720-17382746,17382870-17383038,
           17383259-17383327,17385364-17385699
          Length = 446

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 404 VRSRXSAVGTTLQNADDATLTAETVFSEIQEQH-EAVLAAGLQDPGHAEVHHVVVHN 571
           VR R + V  + +   D T T ETV + +QE     V  +GL   G    H ++ +N
Sbjct: 102 VRYRQTVVVRSYEVGPDRTATLETVLNLLQETALNHVWMSGLLGDGFGATHAMITNN 158


>03_01_0020 + 180963-181346,181432-181994,183000-183822
          Length = 589

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 531 TPGTRRYIMLLCTTASQRITVFSVR*ILNSILTGCLSLRS 650
           T G R   M+LC   ++R+T   V   L + LTG + L S
Sbjct: 45  TGGWRSAAMILCVELNERLTTLGVAVNLVTYLTGTMHLGS 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,347
Number of Sequences: 37544
Number of extensions: 322623
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)