Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B13
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)             28   7.2  
SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)               28   9.5  

>SB_9922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 490 DFAEDRLGCKSCIICVLKSRPDRAXPAAHLHVH 392
           D A+D++ CK C   V  SR + +   AHL  H
Sbjct: 43  DTAQDKVMCKKCFAVVATSRGNTSNLIAHLRNH 75


>SB_24921| Best HMM Match : Pyr_redox (HMM E-Value=4.7e-15)
          Length = 256

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
 Frame = -3

Query: 596 EHSYTLGGCCA-QQHD---VPPRAR 534
           +H Y +G CCA QQ D   VPPRA+
Sbjct: 222 DHIYVIGDCCACQQPDGSWVPPRAQ 246


>SB_50088| Best HMM Match : RanGAP1_C (HMM E-Value=0.001)
          Length = 636

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 239 SFFPQK*SCFFRMATLDYPRLVQVKHLEILSKSV 138
           S+FPQ  +CFF +A L  P     +H E+L K++
Sbjct: 469 SYFPQSLTCFF-VAFLTKPNTRLSQHPELLKKAL 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,883,575
Number of Sequences: 59808
Number of extensions: 379919
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)