Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_B12
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 127 2e-30
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 50 4e-07
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 48 2e-06
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 31 0.28
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 1.1
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 3.5
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 26 6.1
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 26 6.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.1
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 6.1
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 127 bits (307), Expect = 2e-30
Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N C +PP + + T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADE-DAEFDREQEQE 549
EMEF EAESNMNDLVSEYQQYQEA DE D +++ E+E+E
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEIEEEKE 444
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 50.0 bits (114), Expect = 4e-07
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = -1
Query: 716 MFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSEYQQY-QEATADEDAEFDRE 561
M+ ++AF+HWY GEGM+E EF EA ++ L +Y++ Q++ +E E D E
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEADEE 454
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 48.0 bits (109), Expect = 2e-06
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = -1
Query: 716 MFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSEYQQYQEATADED 579
M+ ++AF+HWY GEGM+E EF EA ++ L +Y++ + + + D
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEVD 443
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 764 TPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMN---DLVSEYQQYQE 597
T LFK Q + +R AFL Y E + E + E +S+ + DL++EY+ ++
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYEACED 440
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 623 QGRSCCSQPRGTPSRPCPRRCTNAKKPC 706
+G SCCS+ +PS P C+ KK C
Sbjct: 221 EGSSCCSKKDSSPSEK-PSCCSQEKKSC 247
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 542 PRSPAPAPGQTLRPR-RRWPPGTVGTRRQGRSCCSQPRGTPSRPCPRRCTNAKKP 703
PR P P PG+TL P+ R P + +P R P T KP
Sbjct: 590 PRVPTPVPGRTLSPKPTRIPTPIPSSLNVSLESSKKPEIFHERHIPTPETGPNKP 644
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 428 SYYINTKSKSIVDLSKGERWKGG 496
SY++ SI+ S G++WK G
Sbjct: 56 SYFVTRNKSSIIAFSIGKKWKPG 78
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -1
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIEDN 537
E + P++ + +N+L + + + E + AE R++ QE+ N
Sbjct: 409 EAKIPDSIAKLNELTASNENHYELKTYDRAERLRQKIQEVSSN 451
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -1
Query: 671 MDEMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIED 540
+DE E E ES+MN + + + +D + E +++ ++E+ D
Sbjct: 3948 LDESEARELESDMNGVTKDSVVSENENSDSEEE-NQDLDEEVND 3990
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +3
Query: 57 SKTLIDLEKKKLYDIN*L---SLEKANNSSHWLQNEELKLHL 173
SKTL DL+K+KL + N + SL K N S LQ E+L L
Sbjct: 152 SKTLTDLKKRKLVERNKIMYFSLRKGPNFS--LQIEKLNTDL 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,248
Number of Sequences: 5004
Number of extensions: 52083
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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