Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_B12
(869 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 144 5e-35
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 143 2e-34
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 141 6e-34
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 141 6e-34
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 140 1e-33
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 137 8e-33
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 137 8e-33
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 130 9e-31
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 130 2e-30
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 56 4e-08
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 56 4e-08
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 56 4e-08
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 56 4e-08
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 53 3e-07
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 53 3e-07
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 37 0.015
At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family... 32 0.43
At3g24550.1 68416.m03083 protein kinase family protein contains ... 32 0.57
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 31 1.3
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put... 29 5.3
At1g51850.1 68414.m05845 leucine-rich repeat protein kinase, put... 29 5.3
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put... 29 5.3
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 28 7.1
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont... 28 7.1
At1g26500.1 68414.m03230 pentatricopeptide (PPR) repeat-containi... 28 7.1
At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger) fa... 28 9.3
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 9.3
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 144 bits (350), Expect = 5e-35
Identities = 67/101 (66%), Positives = 75/101 (74%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C IPP G + A T +G ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 346 IPNNVKSSVCDIPPTGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 405
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIE 543
EMEF EAESNMNDLVSEYQQYQ+ATADE+ E+D E+EQ E
Sbjct: 406 EMEFTEAESNMNDLVSEYQQYQDATADEEDEYDEEEEQVYE 446
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 143 bits (346), Expect = 2e-34
Identities = 65/99 (65%), Positives = 75/99 (75%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C IPP G + A T +G ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 346 IPNNVKSSVCDIPPKGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 405
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQE 549
EMEF EAESNMNDLV+EYQQYQ+ATADE+ E+D E+E+E
Sbjct: 406 EMEFTEAESNMNDLVAEYQQYQDATADEEGEYDVEEEEE 444
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 141 bits (341), Expect = 6e-34
Identities = 65/101 (64%), Positives = 75/101 (74%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C IPP G + A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIE 543
EMEF EAESNMNDLVSEYQQYQ+ATADE+ +++ E+E E +
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDEEEGEYQ 445
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 141 bits (341), Expect = 6e-34
Identities = 65/101 (64%), Positives = 75/101 (74%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C IPP G + A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIE 543
EMEF EAESNMNDLVSEYQQYQ+ATADE+ +++ E+E E +
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATADEEGDYEDEEEGEYQ 445
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 140 bits (339), Expect = 1e-33
Identities = 67/101 (66%), Positives = 75/101 (74%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C IPP G + A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIE 543
EMEF EAESNMNDLVSEYQQYQ+ATADE+ E++ E+E E E
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATADEEGEYE-EEEAEYE 444
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 137 bits (332), Expect = 8e-33
Identities = 66/101 (65%), Positives = 74/101 (73%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C IPP G + A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIE 543
EMEF EAESNMNDLVSEYQQYQ+ATADE+ ++ E E E+E
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATADEEEGYEYE-EDEVE 444
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 137 bits (332), Expect = 8e-33
Identities = 66/104 (63%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C I P G A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIAPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDR-EQEQEIEDN 537
EMEF EAESNMNDLVSEYQQYQ+ATAD++ E++ E E+EI D+
Sbjct: 405 EMEFTEAESNMNDLVSEYQQYQDATADDEGEYEEDEDEEEILDH 448
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 130 bits (315), Expect = 9e-31
Identities = 62/98 (63%), Positives = 72/98 (73%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C I P G + A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIAPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQ 552
EMEF EAESNMNDLV+EYQQYQ+ATA E+ E++ E+E+
Sbjct: 405 EMEFTEAESNMNDLVAEYQQYQDATAGEE-EYEEEEEE 441
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 130 bits (313), Expect = 2e-30
Identities = 61/99 (61%), Positives = 72/99 (72%)
Frame = -1
Query: 845 IPXNXKXXXCXIPPXGXQXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMD 666
IP N K C I P G + A T IG ST Q +F+ Q AMFRRKAFLHWYTGEGMD
Sbjct: 345 IPNNVKSSVCDIAPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD 404
Query: 665 EMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQE 549
EMEF EAESNMNDLV+EYQQYQ+AT E+ E++ ++E+E
Sbjct: 405 EMEFTEAESNMNDLVAEYQQYQDATVGEE-EYEEDEEEE 442
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -1
Query: 794 QXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSE 615
Q A I ST +F + M+ ++AF+HWY GEGM+E EF EA ++ L +
Sbjct: 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 614 YQQY-QEATADEDAE 573
Y++ E DED E
Sbjct: 432 YEEVGAEGGDDEDDE 446
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = -1
Query: 794 QXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSE 615
Q A I +T +F + M+ ++AF+HWY GEGM+E EF EA ++ L +
Sbjct: 372 QRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 614 YQQY-QEATADEDAEFD 567
Y++ E D+D E D
Sbjct: 432 YEEVGGEGAEDDDEEGD 448
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -1
Query: 794 QXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSE 615
Q A I ST +F + M+ ++AF+HWY GEGM+E EF EA ++ L +
Sbjct: 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 614 YQQY-QEATADEDAE 573
Y++ E DED E
Sbjct: 432 YEEVGAEGGDDEDDE 446
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = -1
Query: 794 QXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSE 615
Q A I ST +F + M+ ++AF+HWY GEGM+E EF EA ++ L +
Sbjct: 372 QRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 614 YQQY-QEATADEDAE 573
Y++ E DED E
Sbjct: 432 YEEVGAEGGDDEDDE 446
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -1
Query: 794 QXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSE 615
Q A I +T +F + M+ ++AF+HWY GEGM+E EF EA ++ L +
Sbjct: 372 QRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 614 YQQYQEATADEDAE 573
Y++ D++ +
Sbjct: 432 YEEVGAEGGDDEED 445
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -1
Query: 794 QXAXTXIGXSTPXQGLFKXXXXQXXAMFRRKAFLHWYTGEGMDEMEFPEAESNMNDLVSE 615
Q A I +T +F + M+ ++AF+HWY GEGM+E EF EA ++ L +
Sbjct: 372 QRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD 431
Query: 614 YQQYQEATADEDAE 573
Y++ D++ +
Sbjct: 432 YEEVGAEGGDDEED 445
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 37.1 bits (82), Expect = 0.015
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -1
Query: 689 WYTGEGMDEMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQE 549
W+TGE ++ EF E +++ D + E + E DED E D E E+E
Sbjct: 293 WFTGEAIEGEEF-EIDNDDEDDIDEDEDEDEEDEDEDEEEDDEDEEE 338
>At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 175
Score = 32.3 bits (70), Expect = 0.43
Identities = 18/38 (47%), Positives = 20/38 (52%)
Frame = +2
Query: 548 SPAPAPGQTLRPRRRWPPGTVGTRRQGRSCCSQPRGTP 661
SP P P Q+ PR R PP V T CC+QP G P
Sbjct: 73 SPPPPPSQSSPPRSRCPP--VPT----TGCCNQPPGPP 104
>At3g24550.1 68416.m03083 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 652
Score = 31.9 bits (69), Expect = 0.57
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 548 SPAPAPGQTLRPRRRWPPGTVGTRRQGRSCCS-QPRGTPSRPCPRRCTNAKKP 703
S AP+PG T P PP T + S P TPS P P TN+ P
Sbjct: 2 STAPSPGTTPSPSPPSPPTNSTTTTPPPAASSPPPTTTPSSPPPSPSTNSTSP 54
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -1
Query: 689 WYTGEGMDEMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQE 549
W+TGE M+ +F E + + D + E + ++ +ED + + E+E +
Sbjct: 294 WFTGEAMEAEDF-EIDDDEEDDIDEDEDEEDEEDEEDDDDEDEEESK 339
>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 851
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +1
Query: 625 RSFMLLSASGNSIS-SMPSPVYQCKKALRLNIAXNXSXMXLNSP 753
+S ++++ SGN++S S+P + Q KK L+LN+ N + LN P
Sbjct: 422 KSLLVINLSGNNLSGSVPQTLLQ-KKGLKLNLEGN---IYLNCP 461
>At1g51850.1 68414.m05845 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 865
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 619 ETRSFMLLSASGNSISSMPSPVYQCKKALRLNIAXN 726
+ +S ++++ SGN++S P KK ++LN+ N
Sbjct: 428 DIKSLLVINLSGNNLSGSVPPSLLQKKGMKLNVEGN 463
>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase GI:1321686 from (Arabidopsis thaliana); contains
leucine rich repeat (LRR) domains, Pfam:PF00560;
contains protein kinase domain, Pfam:PF00069
Length = 885
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 619 ETRSFMLLSASGNSISSMPSPVYQCKKALRLNIAXN 726
+ +S ++++ SGN++S P KK ++LN+ N
Sbjct: 448 DIKSLLVINLSGNNLSGSVPPSLLQKKGMKLNVEGN 483
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 677 EGMDEMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIED 540
EG D+ E E + E ++ +E DE+AE E E+E ED
Sbjct: 90 EGEDKEEEEGGEDEEEEEGGEDEEAEEGGEDEEAEEGVEDEEEEED 135
>At3g15410.1 68416.m01955 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596;
identical to leucine-rich repeat protein [Arabidopsis
thaliana] gi|2760084|emb|CAA76000
Length = 584
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 640 LSASGNSISSMPSPVYQCKKALRLNIAXN 726
L A+ N ISS+P + C K +L++ N
Sbjct: 142 LKATNNQISSLPEDMVNCSKLSKLDVEGN 170
>At1g26500.1 68414.m03230 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 505
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -1
Query: 713 FRRKAFLHWYTGEG----MDEMEFPEAESNMNDLVSEYQQYQEATADEDAEFDREQ 558
F FLH+Y+ E +EM E ++ DL +Q+Y E + DR+Q
Sbjct: 446 FDYSKFLHYYSNEEGVVMFEEMAKKLREVSLFDLADIFQRYGEKMTTRERRRDRDQ 501
>At5g44280.1 68418.m05420 zinc finger (C3HC4-type RING finger)
family protein contains similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 486
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 650 EAESNMNDLVSEYQQYQEATADEDAEFDREQEQEIED 540
E + + +D + ++ EA DE+AE + E+E+E E+
Sbjct: 66 EEDDDGDDAEEDEEEEVEAEEDEEAEEEEEEEEEEEE 102
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 27.9 bits (59), Expect = 9.3
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 13/60 (21%)
Frame = +2
Query: 542 PRSPAPAPGQTLRPRRRWP-------PGTVGTRRQG-----RSCCSQPRG-TPSRPCPRR 682
PR +P P + L PRRR P PG+ RR+G R S RG +PS P PRR
Sbjct: 221 PRRRSPLPRRGLSPRRRSPDSPHRRRPGS-PIRRRGDTPPRRRPASPSRGRSPSSPPPRR 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,886,483
Number of Sequences: 28952
Number of extensions: 288341
Number of successful extensions: 1123
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2038669600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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