Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B11
         (847 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.75 
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   5.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.0  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 293 EMKADGLLEYFRPLHDWLRAENQRTGEHIGWEPTN 189
           E KADG   + RP+  W RA     G++  ++P N
Sbjct: 719 ECKADG---FPRPVVTWKRATGVSPGDYKDFKPNN 750


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -3

Query: 533 YHVSANVEYARYYVSFIIQFQFHRAL 456
           Y+    VE+ ++Y  FI+ F  +  L
Sbjct: 140 YYEQYAVEFFQFYAQFIVYFLIYAVL 165


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 696 YRSHTPWTCSDTVCS 652
           YR    WT SD  C+
Sbjct: 680 YRQEAQWTSSDNPCT 694


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,215
Number of Sequences: 336
Number of extensions: 2797
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23348025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)