Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B11
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   2.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.7  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   7.7  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   7.7  

>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -3

Query: 542  AAKYHVSANVEYARYYVSFIIQFQFHRALCQLAGEHAAGDPNKKLVDCDIYQSVAAGNAL 363
            A +  +  + +Y ++Y+  ++QF+    L +L G+  +G   ++ V   +Y     G A+
Sbjct: 919  AGEVRLGKSDDYDKWYIDILVQFREEEGLQKLTGQRQSG--GERSVSTIMYLLSLQGLAI 976

Query: 362  A 360
            A
Sbjct: 977  A 977


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 462  TVELELDYERHVISGVFDVGRHMVLGCGVEVVLSSIDGRLHALXAAPFSFQ*WQLXSSGS 641
            T++L    E+H +    ++GR       ++V L+ ID +   L A   SF    L +S S
Sbjct: 1583 TIDLHQRSEKHEVKNKANLGRKHQEATSMKVHLAEIDFKTIDLRAISASFDEGALDNSDS 1642

Query: 642  V 644
            +
Sbjct: 1643 I 1643


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -2

Query: 261 PAAPRLAAGG----EPADRRAHRLGTDQHGVLHAEPIVGAKREGAGVESSDA 118
           P APR +AG      PA  +   LG   +    A PI  A   G G ++SDA
Sbjct: 329 PVAPRPSAGAGGANPPAASQPGLLGGSSNS---AGPIAAATAAGVGADASDA 377


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 613 WKLKGAAXKAWSRPSIELRTTS-TPQPSTMCLPTSNTPDITC 491
           W+ +G     ++R  I    TS +PQP+    P ++ PD  C
Sbjct: 316 WRSEGIRSWFFNRSEIPSDITSGSPQPAKWSEPVADFPDTKC 357


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 700 FLPFAYTLDLFRYGVFRRKTLP 635
           FL   +TL L +YG F R TLP
Sbjct: 329 FLMDDFTLSLTQYGAFYRGTLP 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,625
Number of Sequences: 5004
Number of extensions: 46222
Number of successful extensions: 173
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)