Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B11
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   8.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   8.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 650 KEDAAGRXQLPLLEAKGSSXQGVEPPV 570
           KED      +P LE  G   +G+ PPV
Sbjct: 201 KEDHDDHYGVPTLEELGFDTEGLLPPV 227


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +3

Query: 426 PGRVLARQLAQRTVELELDYERHVISGVFDVGRHMVLGCGVEVVLSSIDGRLHALXAAPF 605
           P  +    LA   + +  +    VIS   +      +GC V  V  SI G   A+  A  
Sbjct: 91  PSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCDVYSVFGSISGMGQAMTNAAI 150

Query: 606 SFQ*WQLXS 632
           +F  ++  S
Sbjct: 151 AFDRYRTIS 159


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +3

Query: 426 PGRVLARQLAQRTVELELDYERHVISGVFDVGRHMVLGCGVEVVLSSIDGRLHALXAAPF 605
           P  +    LA   + +  +    VIS   +      +GC V  V  SI G   A+  A  
Sbjct: 91  PSNMFIVSLAIFDIIMAFEMPMLVISSFMERMIGWEIGCDVYSVFGSISGMGQAMTNAAI 150

Query: 606 SFQ*WQLXS 632
           +F  ++  S
Sbjct: 151 AFDRYRTIS 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,078
Number of Sequences: 438
Number of extensions: 3385
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)