Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B11
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20240.1 68415.m02365 expressed protein                             29   2.9  
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea...    28   9.0  
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea...    28   9.0  

>At2g20240.1 68415.m02365 expressed protein 
          Length = 713

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = -3

Query: 332 PWPDAMEALTGQREMKADGLLEYFRPLHDWLRAENQRTGEHIGWEPTNMEYCTPSQLSEL 153
           P PDA + +T  R  KA G+ +          + NQ TG     +PT +    PS    L
Sbjct: 164 PHPDA-KRITVLRPSKAVGVQKCLAEDSKKPASLNQETGWIDAVQPTRIVVLKPSPGKSL 222

Query: 152 NVKEPASSP 126
           ++K  ASSP
Sbjct: 223 DIKAIASSP 231


>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -3

Query: 575 PVNRTEDDFDAAAKYHVSANVEYA--RYYVSFIIQ 477
           P NR+++ +DAA K+ +  N+ +A  +  V FI+Q
Sbjct: 411 PYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQ 445


>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to phospholipase a-2-activating protein
           SP:P27612 from [Mus musculus]
          Length = 760

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = -3

Query: 575 PVNRTEDDFDAAAKYHVSANVEYA--RYYVSFIIQ 477
           P NR+++ +DAA K+ +  N+ +A  +  V FI+Q
Sbjct: 411 PYNRSDNPYDAADKWLLKENLPFAYRQQIVEFILQ 445


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,709
Number of Sequences: 28952
Number of extensions: 256994
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)