Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B09
         (894 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.6  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.9  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   9.9  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 830 DVNGSLFGTKINGTFQNV 777
           ++NG LF    N TFQNV
Sbjct: 445 NINGVLFVFLTNMTFQNV 462


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 830 DVNGSLFGTKINGTFQNV 777
           ++NG LF    N TFQNV
Sbjct: 445 NINGVLFVFLTNMTFQNV 462


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 416 KHNMSTNLSVIKNPRQHN 469
           +HN+S N   +K PR ++
Sbjct: 132 RHNLSLNKCFVKVPRHYD 149


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 143 GHSRSEMSASRRRLSAPNAYDSPP 214
           GH+ + + AS+  L +P++  +PP
Sbjct: 258 GHAFTLVDASQHDLGSPSSGPAPP 281


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,863
Number of Sequences: 336
Number of extensions: 4406
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)