Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_B09
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0954 - 24757417-24758214 31 1.2
03_01_0601 + 4423831-4424115,4424278-4424406,4424615-4424779,442... 30 2.9
07_03_1058 + 23631819-23631943,23632032-23632101,23632196-236333... 29 5.0
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 5.0
02_05_0040 + 25341418-25341810 29 5.0
12_02_0859 - 23751198-23753258 29 6.6
07_03_0658 - 20366559-20367562,20367745-20367937 29 6.6
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333... 29 6.6
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.6
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 29 6.6
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 28 8.7
03_05_0259 + 22444269-22444297,22444818-22445536,22445588-224459... 28 8.7
>12_02_0954 - 24757417-24758214
Length = 265
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 45 PLXGILLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 191
P+ G +RPRP+ A A+ A+ A+G Q+ AP VV S+H
Sbjct: 95 PIGGSTRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146
>03_01_0601 +
4423831-4424115,4424278-4424406,4424615-4424779,
4424925-4425230,4425387-4425448,4425776-4426145,
4426427-4426555,4427233-4427397,4427534-4427839,
4427928-4428068
Length = 685
Score = 29.9 bits (64), Expect = 2.9
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Frame = +2
Query: 602 RPXLESGGWIGPGVFYGGQNSVDG----VSRRSDGSL-NELCLYRPPTVHAYRPFA 754
+P L SGGWIG G GG +++ G V + G L LC HA R FA
Sbjct: 332 KPALTSGGWIGGG---GGDSTMGGGMRVVVTGATGYLGGRLCAALAAAGHAVRAFA 384
>07_03_1058 +
23631819-23631943,23632032-23632101,23632196-23633368,
23633469-23634266
Length = 721
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 633 VPVSS-MEVKTAWMASPGDLTVH*TSSAYIDLPPYTPTAHLRQWG 764
VPVS TA+ SPG T TS PYT TAH + G
Sbjct: 529 VPVSGGAAAATAYTPSPGCTTAVPTSQPLSTSSPYTDTAHATRDG 573
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 539 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 429
Y+TSL + G ++ G+PR C AG D L W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 116 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 214
RRAAP CG S+ S +RR AP S P
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106
>12_02_0859 - 23751198-23753258
Length = 686
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 830 DVNGSLFGTKINGTFQNVVTTPAPLT-QMGGRRVRWEVYISRARLVNRQIA 681
D+N + G +N N + AP+ + G V W Y A+L+N IA
Sbjct: 156 DINDNHVGVDLNSLVSNASASAAPVNLKSGDTIVAWVDYDGGAKLLNVSIA 206
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 171 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 338
V+ G+ H + M L +HG V + L+P L FRQ + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306
>06_03_0108 -
16732215-16732572,16732623-16732741,16733344-16733393,
16734619-16734820
Length = 242
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 617 SGGWIGPGVFYGGQNSVDGVSRRSDGS 697
SGG GP V YGG+ GV R+ D S
Sbjct: 143 SGG-TGPAVDYGGRGDSGGVRRKEDSS 168
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 602 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 504
AG + +SH + P L +FR ++ L+K GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163
>04_04_0585 -
26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -3
Query: 154 SGMPAASGRRCSPTASTMAPCARAAGRGRSKSIPXRGPSLXRT 26
S +PAASG+R S A AAG + + GPSL R+
Sbjct: 263 SPVPAASGKRYPSPRSNSPARAGAAGNENAAAQLAHGPSLSRS 305
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -1
Query: 144 PQLQAGAARLPPAQWHHVLEL-QVAAALRVSL-RGAQAYXVPSF 19
PQL AG PP W +L V+ ++ L RGA + VPSF
Sbjct: 69 PQLHAGERDPPPRAWIEPAKLPPVSEEVQAVLSRGAGVHVVPSF 112
>03_05_0259 +
22444269-22444297,22444818-22445536,22445588-22445937,
22449455-22449757
Length = 466
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -3
Query: 139 ASGRRCSPTASTMAPCARAAGRGRSKSIPXRGPSLXRTQLSL 14
ASGR +P +T+ A AAG G K G L R Q SL
Sbjct: 7 ASGRASNPGEATLHISAAAAGGGDGKQTIDFGKVLVRIQESL 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,238,779
Number of Sequences: 37544
Number of extensions: 557317
Number of successful extensions: 1465
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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