Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B09
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 672 ASPGDLTVH*TSSAYIDLPPYTPTAHLRQWGGSXYDILESPVDFGAKQTPIDV 830
           +SP  L+   TSS      P + TA      G   +++E  VD    Q P+++
Sbjct: 825 SSPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPLNL 877


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = +1

Query: 727 HRTRLPPICVNGAGVVTTFW--KVPLILVPNKLPLTSWGW 840
           HR  +PP+ +  +GVV         L+ V    P   + W
Sbjct: 232 HRGVMPPVILENSGVVHVAQDESTSLVCVAQACPTPEYRW 271


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
 Frame = +1

Query: 727 HRTRLPPICVNGAGVVTTFW--KVPLILVPNKLPLTSWGW 840
           HR  +PP+ +  +GVV         L+ V    P   + W
Sbjct: 232 HRGVMPPVILENSGVVHVAQDESTSLVCVAQACPTPEYRW 271


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = +2

Query: 617 SGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTV 733
           SG      +  G  N     SR +  +   +  ++PPT+
Sbjct: 601 SGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPTL 639


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,505
Number of Sequences: 438
Number of extensions: 5478
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)