Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_B08
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 261 7e-71
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 257 1e-69
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 95 1e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 65 9e-12
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 35 0.012
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.0
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 5.4
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 261 bits (640), Expect = 7e-71
Identities = 132/220 (60%), Positives = 154/220 (70%), Gaps = 2/220 (0%)
Frame = -3
Query: 788 PTYTXXDCXIGXIVSSITASLRFDGXLNVDLTEFQXNLVXTPVSTSHWSRTRQSSL-PRR 612
PTY + I +VSSITASLRF G LNVDL EFQ NLV P H+ S +
Sbjct: 226 PTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLV--PYPRIHFPLVTYSPIVSAA 283
Query: 611 PTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCT-RGDVVPKDVNAAIATIKTKR 435
+ S + T+ P ++A C RGDV+P+DV AA+ +IK++R
Sbjct: 284 KAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRR 343
Query: 434 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 255
TIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY
Sbjct: 344 TIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMY 403
Query: 254 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 135
+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 404 SKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 443
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 257 bits (630), Expect = 1e-69
Identities = 130/220 (59%), Positives = 154/220 (70%), Gaps = 2/220 (0%)
Frame = -3
Query: 788 PTYTXXDCXIGXIVSSITASLRFDGXLNVDLTEFQXNLVXTPVSTSHWSRTRQSSL-PRR 612
P+Y + I +VSSITASLRF+G LNVDL EFQ NLV P H+ + +
Sbjct: 222 PSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLV--PYPRIHFPLVTYAPIVSAA 279
Query: 611 PTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCT-RGDVVPKDVNAAIATIKTKR 435
+ S + T+ P A ++A C RGDV+P+DV AA+ TIK KR
Sbjct: 280 KAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKR 339
Query: 434 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 255
TIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY
Sbjct: 340 TIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMY 399
Query: 254 AKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 135
+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 400 SKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 94.7 bits (225), Expect = 1e-20
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 5/222 (2%)
Frame = -3
Query: 788 PTYTXXDCXIGXIVSSITASLRFDGXLNVDLTEFQXNLVXTPVSTSHWSRTRQSSLPR-- 615
P+Y + + +++ +T S RF G LN DL + N+V P H+ + L
Sbjct: 220 PSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMV--PFPRLHFFMVGFAPLAAIG 277
Query: 614 RPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTRGDVVPKDVNAAIATIKTKR 435
+ + P A P RG V K+V+ I +++TK
Sbjct: 278 SSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKN 337
Query: 434 TIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 255
+ FV+W P + PP DL + + + N+T+I E + RL +F M+
Sbjct: 338 SAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMF 389
Query: 254 AKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 138
++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = -2
Query: 669 YPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLY 496
+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L+
Sbjct: 260 FPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALF 317
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 65.3 bits (152), Expect = 9e-12
Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 8/220 (3%)
Frame = -3
Query: 788 PTYTXXDCXIGXIVSSITASLRFDGXLNVDLTEFQXNLVXTP----VSTSHWSRTRQSSL 621
PT+ + + ++S+ T +LR+ G +N DL +L+ +P + TS+ T Q +
Sbjct: 223 PTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQ-V 281
Query: 620 PRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVC-CTRGDVVPKDVNAAIATIK 444
+ P + + P S ++++ +G+ P DV+ ++ I+
Sbjct: 282 EEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIR 341
Query: 443 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 264
+R F+ W P +V ++ + P + ++ + ML+N T+IA + R ++D
Sbjct: 342 ERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYD 396
Query: 263 LMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 153
+ + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 397 RLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 35.1 bits (77), Expect = 0.012
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 502 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 359
A PVV P + RP++P P LS V PV+ V + PP P
Sbjct: 549 AAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 29.5 bits (63), Expect = 0.58
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 502 AVPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 359
A PVV P + RP++P P S PV V + PP P
Sbjct: 639 AAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -1
Query: 499 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 353
VP V S P+ P +P PSV + V P SV P PEA
Sbjct: 643 VPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEA 691
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 496 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 356
P V S P+ P +P PSV + V P + SV P PE
Sbjct: 539 PEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPE 585
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -1
Query: 499 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 356
VP S P+ P +P PSV + V P + SV P PE
Sbjct: 628 VPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 675
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 499 VPVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 356
VP S P+ P P PSV + V P + SV P PE
Sbjct: 598 VPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -1
Query: 496 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEA 353
P V S P+ P +P PSV + V P SV P PEA
Sbjct: 614 PEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -3
Query: 674 VXTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 549
V P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 289 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 116
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 115 EPKSTK 98
EP+ TK
Sbjct: 208 EPRFTK 213
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 632 QSSLPRRPTMNSFPSPRSQTHASSPPTR 549
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 457 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 371
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 5.4
Identities = 26/101 (25%), Positives = 40/101 (39%)
Frame = -1
Query: 496 PVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVXXXXX 317
PVV + P T+P S P+ S + PVS + T + PP A R N
Sbjct: 988 PVVQNKPAA-TKPV--SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAA 1042
Query: 316 XXXXXXPKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSP 194
+ A T S++ PS ++ +S + S+P
Sbjct: 1043 PVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 460 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 365
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,006
Number of Sequences: 5004
Number of extensions: 64094
Number of successful extensions: 259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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