Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B07
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   194   5e-50
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   192   2e-49
At3g15530.2 68416.m01969 expressed protein                             29   2.6  
At3g15530.1 68416.m01968 expressed protein                             29   2.6  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   5.9  
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono...    28   5.9  
At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR...    28   5.9  

>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  194 bits (473), Expect = 5e-50
 Identities = 97/154 (62%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
 Frame = -3

Query: 585 VRDSSSTVGLSLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRC 406
           +  S    G  LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GVGR 
Sbjct: 11  ITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRT 70

Query: 405 AQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRT 229
           AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRT
Sbjct: 71  AQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRT 130

Query: 228 YRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 127
           YRAHGRINPYMS+PCHIE+ LSE+E+ V +   T
Sbjct: 131 YRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164


>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  192 bits (468), Expect = 2e-49
 Identities = 96/146 (65%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
 Frame = -3

Query: 561 GLSLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFG 385
           G  LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GVGR AQAK +  
Sbjct: 19  GSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHS 78

Query: 384 TTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRIN 205
             QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRIN
Sbjct: 79  NGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRIN 138

Query: 204 PYMSSPCHIEVCLSEREDAVARVAPT 127
           PYMS+PCHIE+ LSE+E+ V +   T
Sbjct: 139 PYMSNPCHIELILSEKEEPVKKEPET 164


>At3g15530.2 68416.m01969 expressed protein
          Length = 288

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +2

Query: 32  LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 136
           LLF+ + +SL+    +  F +  FFL+SFF +GA+ + A
Sbjct: 28  LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66


>At3g15530.1 68416.m01968 expressed protein
          Length = 288

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
 Frame = +2

Query: 32  LLFNPYVYSLI----IFSF*RASFFLESFFFAGASSVGA 136
           LLF+ + +SL+    +  F +  FFL+SFF +GA+ + A
Sbjct: 28  LLFHAFFFSLLSLLFLIYFDQICFFLDSFFLSGAARLAA 66


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 354 RISWASDPVLCQTALLEHSD 413
           R+SWASD +LCQ  L    D
Sbjct: 9   RVSWASDSMLCQVKLFLSDD 28


>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 441

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = -3

Query: 534 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 361
           N Y  A+    M L     V  L   +E  +          +  C  AKQ    Q R  +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392

Query: 360 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 235
               FL  L+RN   N  +  ++V    I+  +V  A  L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434


>At1g72860.1 68414.m08427 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1163

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 602 KAGWYRSGIPRALLAYRSVFTLRTHMRPQWQSERCRSV 489
           +A W   G+P A+ AY   F   T ++ +W    CR +
Sbjct: 375 RASWLAQGLPVAIEAYGLFFRRMTSLK-EWDDALCRFI 411


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,120
Number of Sequences: 28952
Number of extensions: 316567
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)