Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_B03
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                  59   4e-09
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 52   4e-07
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)                    30   2.5  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    28   7.6  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score = 59.3 bits (137), Expect = 4e-09
 Identities = 23/44 (52%), Positives = 35/44 (79%)
 Frame = -2

Query: 651 EELXKVFMSCNLITGMFQRLDKMRKQAFASVCLFGEDNNSTISG 520
           ++L  VFM+CNL+ GM QRL+K+ K  F S+C+FGE++N +I+G
Sbjct: 47  KDLGMVFMACNLVGGMIQRLEKLVKNGFGSICIFGENHNCSIAG 90



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -1

Query: 748 STPTRRS*SIPYSWEKFDPENYSIWYAEYK 659
           S     S +IPY WE FD E YS+W+ EYK
Sbjct: 13  SNEDTESKAIPYFWENFDKEGYSLWFLEYK 42


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = -2

Query: 483 LSSDWQVDYESYDWKKLDPSSEETKKLVQDYF-SWNGTDKDGRKFNQGKIFK 331
           L+ DW VD  SY  ++L+P     KKL++DYF         G+KFNQGK+FK
Sbjct: 152 LNEDWNVDAPSYTSRRLNPDDPADKKLIEDYFIQREELTYRGKKFNQGKVFK 203


>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
          Length = 703

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -3

Query: 401 SRTTSRGTEPTKTVESSTRARYSSECRPTSSQ 306
           SRT SRG EPTKT  S + AR     R +S Q
Sbjct: 668 SRTLSRGREPTKTSLSKSPARPGVAKRSSSLQ 699


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 422  ARRPRNLSRTTS--RGTEPTKTVESSTRARYSSECRPTSSQC 303
            ARR + LSR+TS  RG+  ++  E S R R  +E R +S  C
Sbjct: 1164 ARRSKQLSRSTSDPRGSLSSERPERSRRRRTETEPRDSSLPC 1205


>SB_24051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 889

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 494 SSFPRHTHTPEMVELLSSPNRQTDAKACLR 583
           S+ PR   + E + LL  P  + DA+AC+R
Sbjct: 413 SAIPRSRRSFESLPLLQQPTSRRDARACVR 442


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 371 TKTVESSTRARYSSECRP-TSSQCIHISYNNY 279
           TK  +S+ RA    EC   T ++CI +SYN+Y
Sbjct: 215 TKPTKSNQRAICCDECGQWTHAKCISMSYNSY 246


>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 428 LRARRPRNLSRTTSRGTEPTKTVESSTRA--RYSSECRPTSSQ 306
           LR +RPR  SR    G     + ++  +     SSEC PTSS+
Sbjct: 595 LREKRPRGQSRENRNGVFVFPSTDNGLQGITSDSSECTPTSSE 637


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,541,655
Number of Sequences: 59808
Number of extensions: 545166
Number of successful extensions: 1644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1638
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)