Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A24
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.0  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    27   4.5  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   4.5  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   7.9  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/90 (27%), Positives = 39/90 (43%)
 Frame = +3

Query: 426 ASWSDSSDLCVTELPSAGRARAIAWRSSSVKPLPDSSVTVTGDFCICSRTVAASDPAGIS 605
           +S S SS    T  PS+    + +  SSS  P+  S  +        S + +++  +G  
Sbjct: 135 SSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSI 194

Query: 606 GSASRGTLSXCILXLVSESGFSVSTLRSIS 695
            SA   T+S      +  SGFS ST  + S
Sbjct: 195 SSADAKTVSASSNSTI--SGFSTSTTSASS 222


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 329 DG-SMSSSDLIASFCLPFVTFRGALXEYRCGWCGI 430
           DG S   S L+ SFC+P       +  YRCG CGI
Sbjct: 619 DGTSFPVSFLLKSFCIP------EMQTYRCGICGI 647


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 663 GFSVSTLRSISXYSEPRXXPTSFVINIPTALXG 761
           G++ S +R    YSEP   P+     +PT + G
Sbjct: 566 GYTPSVVREEKNYSEPNASPSVIPPRVPTPVPG 598


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 439 SDQDATPTTPVFXKCSPESHERQAEGSDQV*RRHAAVEGNAVPTARLRPGADLP--HRTE 266
           SD +++   P+  + +    ERQ  G D+  RR    +G A     L    D+P  HR+ 
Sbjct: 350 SDMESSSFAPMIYELNDAEMERQDRGYDREARRMRRRQGRAKHGIMLPDLRDIPKIHRSL 409

Query: 265 RRSVSCP 245
             S S P
Sbjct: 410 FPSSSVP 416


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 429 SWSDSSDLCVTELPSAGRARAIAWRSSSVKPLPDSSVTVTGDF 557
           S  DSSD   TE  S  R+        S + +PDS+V V G F
Sbjct: 118 SAKDSSDDVFTETNSGFRSSNQNSSLKSFQSVPDSNVNVFGGF 160


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 435 SDSSDLCVTELPSAGRARAIAWRSSSVKPLPDSSVTVTGDFCICSRTVAASDPAGISGSA 614
           S +S    + +PSA  +  +A  SS       SS+T +G     S  V  S PA  S + 
Sbjct: 571 SSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSITASGTTSSTSEIV--STPASNSNTG 628

Query: 615 S-RGTLS 632
           S  GT S
Sbjct: 629 SLNGTSS 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,895
Number of Sequences: 5004
Number of extensions: 60957
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)