Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A24
         (862 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57597| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)                     31   1.2  
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)              31   1.2  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 31   1.6  
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)       30   2.8  
SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   4.9  
SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)                       29   4.9  
SB_55437| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    29   6.4  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         28   8.5  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_57597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 32.7 bits (71), Expect = 0.39
 Identities = 21/76 (27%), Positives = 34/76 (44%)
 Frame = +3

Query: 465 LPSAGRARAIAWRSSSVKPLPDSSVTVTGDFCICSRTVAASDPAGISGSASRGTLSXCIL 644
           LPS G + A A   + V+P+  S V   G  C+    V    P G+SG+++ G      +
Sbjct: 60  LPSVGVSGASALSVNGVRPVGVSCVRPVGVSCVRPVGVIGVRPVGVSGASAVGVSGASAV 119

Query: 645 XLVSESGFSVSTLRSI 692
            +   S   V  +R +
Sbjct: 120 GVSGASAVGVIGVRPV 135


>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
          Length = 480

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 323 KRSPNGEAPPRRRSAPQN*EAVRLVPATLARGAAPARSVPANS--GWPAPCHDVVPYP 156
           KR  +   PP  R  P N    +  P   +R  APA   P N+    P P  D VP P
Sbjct: 274 KRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLP 331


>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
          Length = 392

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = -3

Query: 323 KRSPNGEAPPRRRSAPQN*EAVRLVPATLARGAAPARSVPANS--GWPAPCHDVVPYP 156
           KR  +   PP  R  P N    +  P   +R  APA   P N+    P P  D VP P
Sbjct: 186 KRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRDQVPLP 243


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 192 ATVGRYRPGW--RGAASQRRGHETDRLSVLWGRSAPGRSLAVGTA 320
           AT G Y   +  RGA   R  H     S+ WG  + GR LA+G A
Sbjct: 343 ATFGAYVYSYAVRGAVHMRTDHAAYLNSLFWGALSVGRFLAIGIA 387


>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
 Frame = -1

Query: 325 GNAVPTARLRPGADLPHRTERRSVSCPRRW---LAAPRQPGRYLPTVAGPRHATT*FLTR 155
           G   P +  + G +L  R +R  VSC RRW    A+ R      PT+    H      T 
Sbjct: 99  GELKPKSAWQSGTELTERRKRHFVSCRRRWPRGRASRRDARACAPTMPSASH------TH 152

Query: 154 *GDDRYILSMKWDPQSK 104
                 +L  +W P S+
Sbjct: 153 QSRKPTLLGRRWRPHSR 169


>SB_34997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -1

Query: 574 VLEQMQKSPVTVTEESGRGLTEDDRQAI--ARALPADGSSVTQRSELSDQDATPTTPVFX 401
           V+E++    +T+    G  LTED R  +  ARA  AD         LS  D      VF 
Sbjct: 580 VIEKLPDGDLTLIGSQGVPLTEDQRVRVGLARAAFADAEIYLLDDPLSGVDTKIAEQVFD 639

Query: 400 KC 395
           KC
Sbjct: 640 KC 641


>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 263 AVRLVPATLARGAAPARSVPANSGWPAPCHDVVPYP 156
           A  LVP  L R  AP    PA +  P PC+  VP+P
Sbjct: 72  ATALVPHPLPRPCAPP---PATALCPTPCYGPVPHP 104


>SB_10597| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-34)
          Length = 728

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   FFFFFLEHLISGKHHPKFSGGLVLQTPCSFEPSH 104
           F FF    L+    HPK +  + LQ+P S++PS+
Sbjct: 493 FHFFKFSQLLKVNGHPKEALSMFLQSPRSYKPSN 526


>SB_32583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/72 (29%), Positives = 27/72 (37%)
 Frame = -3

Query: 251 VPATLARGAAPARSVPANSGWPAPCHDVVPYPLR**QVYPLDEVGPSK*M*GFEGAGCLK 72
           VP  L R   P    PA+S  P PC+ + P+PL    + P     P             +
Sbjct: 4   VPHPLLRHHPPP---PASSSSPTPCYGITPHPLHRHHLPPPATASPPTPCIVIISHPLHR 60

Query: 71  HEPPRKLWMMFP 36
           H PP      FP
Sbjct: 61  HHPPPPASSSFP 72


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 7/96 (7%)
 Frame = -1

Query: 475  ADGSSVTQRSELSDQDATPTTPVFXK----CSPESHERQAEGSDQV*RRHAAVEGNA--- 317
            +D     ++  +S +D    +P+  +     SP    R A GSD    R +    +    
Sbjct: 801  SDSPPERKKGSVSPRDQRRRSPMRRRRSRDASPRRRRRSASGSDSSPHRRSESPRDRRRR 860

Query: 316  VPTARLRPGADLPHRTERRSVSCPRRWLAAPRQPGR 209
             P  R R  A  P R  +R  S PRR   +P  P R
Sbjct: 861  SPEHRRRREASPPRRDRKRYDSPPRRRRRSPSPPPR 896


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 341 TCCRRGKRSPNGEAPPRRRSAPQN*EAVRLVPATLARGAAPARSVP 204
           T  R+ + SPN  +PP RR +P      R  P+   R  +P+R  P
Sbjct: 546 TSPRQRRTSPNNRSPPPRRRSP---SPRRPSPSPRRRSTSPSRKSP 588


>SB_40791| Best HMM Match : G2F (HMM E-Value=0.9)
          Length = 535

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 325 GNAVPTARLRPGADLPHRTERRSVSCPRRW 236
           G   P    + G +L  R +R  VSC RRW
Sbjct: 353 GELKPEGAWQSGTELTERRKRHFVSCSRRW 382


>SB_55437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 414 VVGVASWSDSSDLCVTELPSAGRARAIAWRSSSVKPLPDSSVTVT 548
           V G AS S     C T  P + R R +A+ SSSV     S  + T
Sbjct: 52  VTGKASTSKRPLSCSTSAPGSSRKRTLAYSSSSVPSKASSPSSCT 96


>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 251 VPATLARGAAPARSVPANSGWPAPCHDVVPYPL 153
           VP  L R  AP    PA +  P PC+  VP+PL
Sbjct: 887 VPHPLLRPCAPP---PATALCPTPCYGPVPHPL 916



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 251  VPATLARGAAPARSVPANSGWPAPCHDVVPYPL 153
            VP  L R  AP    PA +  P PC+  VP+PL
Sbjct: 912  VPHPLLRPCAPP---PATALCPTPCYGPVPHPL 941



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 251 VPATLARGAAPARSVPANSGWPAPCHDVVPYPL 153
           VP  L R  AP    PA +  P PC+  VP+PL
Sbjct: 862 VPHHLLRPCAPP---PATALCPTPCYGPVPHPL 891


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/80 (23%), Positives = 34/80 (42%)
 Frame = +1

Query: 31  SQGNIIQSFRGGSCFRHPAPSNPHIYFEGPTSSRGYTCHHLNG*GTTSWHGAGQPLLAGT 210
           S      + R    FR PAPS     F  PT+++ +    L+   +TS     QP+  G 
Sbjct: 241 SNSRTFAAARPSQSFRRPAPSTETKSFAPPTTAQSFAIPGLSNAASTS----KQPISGGV 296

Query: 211 DRAGAAPRASVAGTRRTASQ 270
               +A  +  +  ++++ Q
Sbjct: 297 GGTSSATSSGASTGQKSSMQ 316


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 595 AGSDAATVLEQMQKSPVTVTEESGRGLTEDDRQAI 491
           +G D      Q +K P+ + EE  R LTE++R+ I
Sbjct: 304 SGHDEDEEETQRKKKPLPIQEEFSRELTEEERERI 338


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/61 (24%), Positives = 24/61 (39%)
 Frame = -1

Query: 535  EESGRGLTEDDRQAIARALPADGSSVTQRSELSDQDATPTTPVFXKCSPESHERQAEGSD 356
            EE  +    D R+ I +A P  G    +  E     +TP  P       +  E ++EG  
Sbjct: 1442 EEDDQDTVADSRERIIKAQPGPGVRGKRTEERPLHRSTPARPARGIIEDDEEEEESEGES 1501

Query: 355  Q 353
            +
Sbjct: 1502 E 1502


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,770,357
Number of Sequences: 59808
Number of extensions: 549503
Number of successful extensions: 2292
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2288
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)