Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_A24
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical...    30   2.4  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    29   3.2  
AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator prote...    29   5.6  
AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator prote...    29   5.6  
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    28   7.4  

>AC024810-10|AAF60767.1|  165|Caenorhabditis elegans Hypothetical
           protein Y54E10A.13 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +2

Query: 218 LARRREPASRARDGPPLSSVGQIGAGAEPRRWDCVSLDGSMSSSDLIASF 367
           LARR+ P    + GPP+  V   G+      W   S D +MSSSD ++S+
Sbjct: 29  LARRQAPPPSPQQGPPIHRVSTRGS------W--YSADHAMSSSDPVSSY 70


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 205 GTDRAGAAPRASVAGTRRTASQFCGADRRRGGASPLGLRFP 327
           G + AGAAP A+ A           A+   GGA P G   P
Sbjct: 286 GAEPAGAAPEAAAAAPEAAPEAAPAAEGAGGGAEPAGAAAP 326


>AF067624-3|AAM81100.2|  678|Caenorhabditis elegans Hypothetical
           protein M01B12.4c protein.
          Length = 678

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
 Frame = -1

Query: 673 TLXPLSDTXYKIXXDRVPRDALPLIPAGSDAATVLEQMQKSPVTVTEESGRGLTEDDRQA 494
           TL P +D   K     V   +LPL+P+  + ++      + P   TEE+    + +  +A
Sbjct: 579 TLPPTADDI-KDSTPAVTSASLPLLPSSPEPSSSSSSPAQQPSASTEETAEKASNESGRA 637

Query: 493 ---IARALPADGSSVTQRSELSDQDATPT 416
              +AR      SS  QR     Q + P+
Sbjct: 638 NDVLARVAAMTNSSSLQRILQRKQGSNPS 666


>AF039719-8|AAO12411.1|  338|Caenorhabditis elegans Mutator protein
           2, isoform b protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 604 LIPAGSDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQ 431
           L    SD    +   Q + V   EE GR +T+D+RQA  R +  +   + + +  +D+
Sbjct: 99  LATKNSDLDVAIHIPQAARVLEQEERGRNITDDERQASWREIQLEILQIVRLNLQNDE 156


>AF039719-7|AAB96748.1|  441|Caenorhabditis elegans Mutator protein
           2, isoform a protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 604 LIPAGSDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQ 431
           L    SD    +   Q + V   EE GR +T+D+RQA  R +  +   + + +  +D+
Sbjct: 99  LATKNSDLDVAIHIPQAARVLEQEERGRNITDDERQASWREIQLEILQIVRLNLQNDE 156


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 329 RGKRSPNGEAPPRRRSAPQN*EAVRLVPATLARGAAPARSVPANSGWPAPCHDVVP 162
           RG+R    EAP RR+   ++    R   +  A G +   S P + G   P H V+P
Sbjct: 456 RGRRERESEAPRRRK---EDDRRSRHQDSQEASGGSQEMSFPLSGGITIPQHIVIP 508


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 329 RGKRSPNGEAPPRRRSAPQN*EAVRLVPATLARGAAPARSVPANSGWPAPCHDVVP 162
           RG+R    EAP RR+   ++    R   +  A G +   S P + G   P H V+P
Sbjct: 450 RGRRERESEAPRRRK---EDDRRSRHQDSQEASGGSQEMSFPLSGGITIPQHIVIP 502


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -1

Query: 589 SDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQDATPTTP 410
           SDA++       SP   TEESG   T+    + + +     +S T  S+ S  ++  T P
Sbjct: 458 SDASSSESASSSSPAATTEESGSS-TDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEP 516

Query: 409 VFXKCSPESHERQAEGS 359
                 P     +  GS
Sbjct: 517 SGSSTEPSGSSTEPSGS 533


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -1

Query: 589 SDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQDATPTTP 410
           SDA++       SP   TEESG   T+    + + +     +S T  S+ S  ++  T P
Sbjct: 458 SDASSSESASSSSPAATTEESGSS-TDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEP 516

Query: 409 VFXKCSPESHERQAEGS 359
                 P     +  GS
Sbjct: 517 SGSSTEPSGSSTEPSGS 533


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
           protein F53B7.5b protein.
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -1

Query: 589 SDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQDATPTTP 410
           SDA++       SP   TEESG   T+    + + +     +S T  S+ S  ++  T P
Sbjct: 458 SDASSSESASSSSPAATTEESGSS-TDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEP 516

Query: 409 VFXKCSPESHERQAEGS 359
                 P     +  GS
Sbjct: 517 SGSSTEPSGSSTEPSGS 533


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
           protein F53B7.5a protein.
          Length = 3095

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -1

Query: 589 SDAATVLEQMQKSPVTVTEESGRGLTEDDRQAIARALPADGSSVTQRSELSDQDATPTTP 410
           SDA++       SP   TEESG   T+    + + +     +S T  S+ S  ++  T P
Sbjct: 458 SDASSSESASSSSPAATTEESGSS-TDAVSSSPSGSSSESPNSSTGGSDSSSSESVTTEP 516

Query: 409 VFXKCSPESHERQAEGS 359
                 P     +  GS
Sbjct: 517 SGSSTEPSGSSTEPSGS 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,817,650
Number of Sequences: 27780
Number of extensions: 385394
Number of successful extensions: 1111
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)